RnoINT0118718 @ rn6
Intron Retention
Gene
ENSRNOG00000029279 | Prss33
Description
serine protease 33 [Source:RGD Symbol;Acc:1583742]
Coordinates
chr10:13174325-13174989:-
Coord C1 exon
chr10:13174718-13174989
Coord A exon
chr10:13174495-13174717
Coord C2 exon
chr10:13174325-13174494
Length
223 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
3' ss Seq
ATCTGTCCCTCTTCCCTCAGTAC
3' ss Score
9.15
Exon sequences
Seq C1 exon
GCGGGTCCTGCCATCAGAATACAGTGTGCTCCTCGGGGCGCTGAGTCTGGATGTCACATCATCCCATGAACTCTTGGTTCCTGTGCTGCGGGTGCTGCTGCCTCCTGACTACTCTGAGGATGAGGCCCGTGGTGACCTGGCACTGCTGCAGCTGAGTCACCCAGTGTCCCTGAGTGCCCGCATCCAGCCTGTCTGCCTGCCTGCACCGGGGTCCCATCCACCACCAGGGTCTCCATGCTGGGTCACTGGCTGGGGTAGCCTTAGCCCAGGAG
Seq A exon
GTAAAGCTTATAGTCAGGTTATGGCGGCCTCGGGCATCCCTTTCTCCTCCCTCTGTGAATCCTGGTCTTTCACAGTCCCAGTGCGAGACCCAGTCATGAGCCCAAACCTCCTTTCTATCGGAACCAAGGAGTTTTGGTTTGCAAATCAGACCCTCCTGCTCATTTTTCCATTTTTCCACGCTGTCCTGTCTCCTGAGTCTCGAATCTGTCCCTCTTCCCTCAG
Seq C2 exon
TACCACTCCCAAAGGGGAGACCCCTGCAAGGAGTGAGGGTGCCACTGCTGGACTCTCGAGCCTGTGACCGCCTCTACCACATGGGTGCCAACGTGCCCAAGAGTGAGCGCATAGTGCTACCAGGAAACCTGTGTGCTGGCTACCGCAGAGGCCACAAGGATGCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029279:ENSRNOT00000034380:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.2=100)
A:
NA
C2:
PF0008921=Trypsin=FE(23.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGCCTCCTGACTACTCT
R:
CACTATGCGCTCACTCTTGGG
Band lengths:
294-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]