RnoINT0118776 @ rn6
Intron Retention
Gene
ENSRNOG00000029649 | Prss45
Description
serine protease 45 [Source:RGD Symbol;Acc:1303021]
Coordinates
chr8:119115735-119116596:+
Coord C1 exon
chr8:119115735-119115882
Coord A exon
chr8:119115883-119116321
Coord C2 exon
chr8:119116322-119116596
Length
439 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
GGGCTCTTGCCTCCCTGCAGCAA
3' ss Score
8.62
Exon sequences
Seq C1 exon
TTTGTGGCGCACCCTGGTGGTCTGACAGCTTGGAGGAGCGCCACCATTGGCCCTGGGAAGTGAGCCTTCAGATAGAAAATGAGCACGTGTGTGGAGGAGCCCTCATTGATCAGAGCTGGGTGGTGTCCGCAGCTCACTGCATCCAGGG
Seq A exon
GTGAGTGTCACCTGTGCACCTAGGATCTAAAAAACCAAGAGCTACCGTGGGCCCAGTCAGGGCCCCTTGGGACTAATAGGAAACCATGCAGGAGGAGGGAACACTGAAGAATGGGAAGAGCTAGGCTCAGTGTCGCACAAGATCCTCTGACTAAGTTGGGATGAGACCTCGAGCAATAGAGACTGTATCCTAAACTGGGCAACAGGAAAACCTACACCCCCCCCACATCAGGAGAACATTTATGGGCACTGATACCCACACATCTTGACCCAATGTGACTGTGAATGAGAGGGTTGTTCTGTCTTTGACTTTGAGCACCCCAGGCTGGATTAACCCAGATTGAGTGGACATCAGAGACAGGAAAAGTCCTGGGAGGAGGCGGGTGCATAGCTGTGCGGAGAGACTGATGTGGACCAGGAGGGCTCTTGCCTCCCTGCAG
Seq C2 exon
CAACAAAGAATACTTAGTGATGTTGGGTAGCAGCACACTCCAGCCCAGCGGCTCCCCCTGGGCCCTGAAGATTCCCGTGGGTGACATCATCATGCATCCCAAGTACTGGGGCCAGAACTTCATCAGAAGCGATATTGCCCTTCTCTGTCTTGAAACCCCTGTCACTTTCAACAAGTACATACAGCCCATCTGTCTCCCAGAGCACAACTTCAACTTGAAGGTCGGTATGAAGTGCTGGGTGACTGGCTGGGGCCAGGCTAAGCAACACCCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029649:ENSRNOT00000043249:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(18.2=86.0)
A:
NA
C2:
PF0008921=Trypsin=FE(39.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGAGCACGTGTGTGGAGG
R:
CTGAGGGGTGTTGCTTAGCCT
Band lengths:
347-786
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]