RnoINT0123495 @ rn6
Intron Retention
Gene
ENSRNOG00000016795 | Rabl6
Description
RAB, member RAS oncogene family-like 6 [Source:RGD Symbol;Acc:1307615]
Coordinates
chr3:2810863-2812430:-
Coord C1 exon
chr3:2812327-2812430
Coord A exon
chr3:2811192-2812326
Coord C2 exon
chr3:2810863-2811191
Length
1135 bp
Sequences
Splice sites
5' ss Seq
CATGTACGT
5' ss Score
6.32
3' ss Seq
CTGCCCTTTTACCCTCCCAGCTT
3' ss Score
7.72
Exon sequences
Seq C1 exon
AGGGAGACATTGCTGAGGCAGCTGGAGACAAACCAACTAGACATCGATGCAACACTAGAGGAGCTGTCCGTGCAGCAGGAGACCGAGGACCAGAACTACAGCAT
Seq A exon
GTACGTGAGCCAGCGTCTATGCCATGTAGGCCCTGACTACATGGAGTGGGAAGGATGGGTCCTACACCCTGTTGCCTCATGTCCACAAATAGGAGCCGGGGCCAAGCTTTGGGCTGTACCTATGAGGCAGTGGAAAAAGCAGCATATACAGTCAGCTTGAGTGTCCTTCAGCCAAGACCTTGGTACTACTCAGTGTAGAACAGTATGGGACGCATCGGACTAACATGGCTCAGCAGCTCCTCTCAGCCTTCTAGGACGTGTCCATGCTGCCCAAAGCTCTTCCTGTTCATCTATTGGGGTTTAGTTATTAATATGAGCTAACTAGTAAAATATTTAGTCAGATCAACATTTGTCTAGAACAAGTAGATTAATATTTTGAACTGAGCTATGCTGACCTGAGGAACAGCCTCAATCTCCCTACATTTCCCTTTCAGTTCTTGTAGAAAGTAAGGGCACATGCTCCTGAAGGTGGGCTGTGTCAGCTCTGGCCCTCTCCACCACCAAGTACTTTGGAGCCTACAGAACCTACAAAGTGCTTAGACCTGTGGTATTGTTCCTATGTGTGGATCAGCACGTGCCTGGATGAGAGCCACTCCTCTTCTCAGGTTGCCATATCTGTCACCATGCACAAAGCTTAAGTGGAGGGTCAAGGACCTCAACATAAAACCAGATACATTGAATCTAATAGAAGAGAAAGTGGGAAAGAGCCTTGAACTCATTGGCACAGGGGAAATTTCCTAAACAGAACTCCAGTGGCTCATGCTCTGACCACCTCGCTAACCATAACCAGTCCCACTTCTTCATCCCTATTGGCCATGTGGGGACTGCCGAGTGCTACTGGCCTGCCCGGATCCCATAGGCATGAGTGGTCCTGAACCTCTGCTGAGCAACTCGGGTCCCCAGGCTGAAGAAGTGCCCGAGTAGAGGGAGAGCATGTCCTTGGGAGCAGCCATGCTAAAGAGACAAGATAGGCAAGGGAGTGGTCTGGGTACCAAAGGCTGGGACAGTGGACTGGCAGAGGACCATGTCCTCTGCCTAATAGTATCAATATAAAAGGCACACTGAGACCTGAAAGCCATGGAGAGAGGGCCAAGAAAAAACTGGTTCCTCACTCCCTGCCCTTTTACCCTCCCAG
Seq C2 exon
CTTCCTTGAAATGATGGAGGCTCGAAGTCGAGGCCATGCATCTCCTTTGGCAGCCAACGGGCAGAGCCCATCCTCAGGCTCCCAGTCGCCAGTCGTGCCTCCAAGTGCTGTATCCACAGGGAGTTCCAGCCCCAGCACACCCCAGCCTGCCCCTCAGCTGTCTCTAGGTGTCTCCTCCACCTGTCCCTCAGCACCATCTCCTGCACCCTCTTTGGAGGCCACGCCCTCCTCTGTACACCCTCCAGCCCCAGCTCCAGCCCAGCGCCGCAGTATCATCTCTCGGCTGTTTGGGACCTCACCAGCTGCAGAAGCGACCATTTCACCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016795:ENSRNOT00000065410:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.457 A=NA C2=0.955
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACACTAGAGGAGCTGTCC
R:
GTCCCAAACAGCCGAGAGATG
Band lengths:
350-1485
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]