DreINT0123785 @ danRer10
Intron Retention
Gene
ENSDARG00000079046 | rabl6a
Description
RAB, member RAS oncogene family-like 6a [Source:ZFIN;Acc:ZDB-GENE-030131-6174]
Coordinates
chr5:5147972-5150529:-
Coord C1 exon
chr5:5150426-5150529
Coord A exon
chr5:5148346-5150425
Coord C2 exon
chr5:5147972-5148345
Length
2080 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGG
5' ss Score
5.25
3' ss Seq
TCCATCAATTATGTTTGCAGATT
3' ss Score
7.51
Exon sequences
Seq C1 exon
AGGGAGACTCTGTTACGGCAACTGGAGACAAATCAGCTTGACATCGATGCCACGCTGGAGGAGCTCAGTGTTCAGCAGGAGACAGAGGACCAGAACTATGACAT
Seq A exon
GTGAGGGTCATGCGCACACACACACGTACAGTACTGCACACACTCAGGCTGCCTCCGAAATCGCCTACTTCACAGTAGGTACTGCGTTTGAACTTAAATGTAGTACCCGACCATTAGGAGTAAAAGTACGTTCTACACAGTTTGAATGCTAGTACTATGAATGGAACTCGGACATACTACATTCGACATTTTGTGATGATCATGTGAACTCCCTGCATCAGTTGCGTTGCTTCACTCCCATTCATGAATTCTCTCGTAGTGAATCATGGGATAGAGTAGTGCGTACCAGATGCAAACCTCAGAGTCTCGGCGGAAGTAGTAGGTCATCCGGGGACTTCTTGCATATTGTTTTTCCAATTCTATGAATTCTGACACACTACTCTGCTCACATACTGTTTTTAGCGTACTATGTAGTATGGAAGAATGAGATTTTTGGATGCAGCCTTATTATATTTAGACTTGGTACATTCACAAAGGCTATGGCTATACCTGAAATTCACTGTGAGAGTTTGCGCACCAAATAAATTCCCATGAGCTGACATGTGAGGGTCAAACCACGCATACACACACACGTACAGTACAGCAAATACTTAGGCTGCCTCCGAAAACGCCTAGGTACTGCGTTTGAACTTAAATGTATCACTTGGCCAACAGAAAAGTACGTTCTATACATTATGAATGTGAGTACTATGAATGAAACTCAGACGTACTACTGCCGCCATTTTGTCATGACTACATGACCTACCCGCGTCAGTTACGTCACTTCACTCCCATTCATGAATTCTCTCGTGGTGCATCATGGAATAGAGTAGCGTGCATCGGATGCAAACTTTAGAATCTTGCTTTAAGTATTACTGTAGGTCATCCGGGTACTTCTAGCATACTGTTTTACGAAATCTATCAATTCTGACAAACTATTCTCGCATACTGTTTTTAGCGTACTATATAGGATGGAAGTATGCGATTTTTGGATGCAGCCTTAGTATATTTAGACTCAGTACATTCACAAAGCCTTTGGCTGTATCTGAAATTTACTGTGAGTTTGCGCACCAAATAAATTCCCACAAACTATGACACACACACACACACACACACACACACACATACAGTACAAATGGTGTTCGCTGGATCTTAAAAAGTTATTAAAAGTTGATAAATCAATTTAGAGAAACTGAAGACCCTTCATTACGTATTAAGAAGCCTTAAATGCTATTTTTCATTTTGCATGTGCTCAGCATAATTGAGTACAGCCCATTTTGAAAATTAATATTTGTATCCATTTCTCAGTGAATATAGGCAATTTGTTTTTGTGCATTTAAACAAAACAGATTTATTAAACAGATATATTTATTAAAATAATATTTTAGTCACCAAGCATATTTAGAAATTGAAAGATAAACAAACAACTAAAATGCCTGGGTCAATCGCGTCGCTTGATTATTAATAGTCCGGACTGCTGAACGAATCACTGGCGCTGGCCTTCCTACACTTCAAGAACTGTACTCCTCCAGAGTGAGTAAAAGGGCTCACAAAATCACTCTGGACGCCTCGCACTCAGCACACTTCCTGTTTAAACTGGTGCTTCAGAGATCCAAGCACAAAAACAGCCAGACACAGGAAAAGTTGCTTTCCTCAGGCCATCTACCTCATGAACAGTTAAATATTCTCCTTCTGTGCAATAAACATGTGCAATACTTTCTCATACACACTTGTTCAAAGCACCTTTTATCAATATACAATGCAGTACTTTCTACATATGCATTTGTACACAGCACCGTATAACCTGTATATTTCTAACAAATCTGTACATACAACTTAACATCCAGAGCTTTTTTGACTAACTGCATCATGTTTAATTTTTATCGCCCTTCTTTCATATTTATTTTGTGTTGTCACTTTATGTACACTGGAAGCTTCTGAATTCCTTGTGTGTGAAGCACACTTGGCAGTAAAACGGATTCTGATCTTGCTACTAAAACTAAAACAAGTCAAGCTAATATTGTTTTATAATTTCTTCAAGATTCATCCACTCAGACAAAAATGTCAACTAATCAAAGTTTTCCATCAATTATGTTTGCAG
Seq C2 exon
ATTTCTTGAGATGATGGAAGCACGCAAAGCTTACGGCTCTCCGGCGCCCTCTAATGGCCAGAGCCCGTCATCTGGCTCCCAGTCTCCTGTGGTTCTTCCTGGAGCCGCTTCTCCCAGTAACTCTAGCCCCAGCACCCCACAGGCTCCTGTCCCACTTCAGACACCTGCCCCACCACCTCCTCCATCTATACCACACCCTACAGCCCAGACCACAGCCACACAAGTCCACCAGACACCATCACAAACCTTAGAGGCTTCACCCGCCACACCGACACCTGCTCCTGCCCAACTTGCAGCTCCTGCTGCACAGAAAAGAGGATTCATCTCACGTTTGTTTGGATCGTCCGCTGCTGAGACTTCACCAGACAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079046:ENSDART00000113716:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.657 A=NA C2=0.968
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]