RnoINT0123928 @ rn6
Intron Retention
Gene
ENSRNOG00000010219 | Ralgds
Description
ral guanine nucleotide dissociation stimulator [Source:RGD Symbol;Acc:3533]
Coordinates
chr3:7109920-7118020:+
Coord C1 exon
chr3:7109920-7110303
Coord A exon
chr3:7110304-7117909
Coord C2 exon
chr3:7117910-7118020
Length
7606 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
CCTGGACCTTGTCTTTCCAGAGC
3' ss Score
8.57
Exon sequences
Seq C1 exon
CCACCAGGCCTAACAACTAGAGGAGGCTTACGGCCCTCGGAAACCACGCCCCCATCAGTCAGTCCCCACCCTCAGCTGACATCAGCGAGTCCGGCCCTGGGCGCAGAGCGCAGGCAGCGCGGAGCCGCGCCGGCCGGCCCTGCGCCCACGCCGCCCCGGGTCTCGCGGCCCGCCGGCCACCCGCGCCACCGGGAGTCGTCCATGGTGCAGCGCATGTGGGCCGAGGCGTCCGGGCCCATAGGGGGCGCCGAGCCGTTGTTTCCCGGCTCCCGGCGCAGCCGCAGCGTGTGGGACGCCGTGCGTCTGGAGGTGGGCGTCCCTGACAGCTGTCCAGTGGTGCTGCACAGCTTCACGCAGCTCGACCCCGATCTGCCGCGCCTGGAG
Seq A exon
GTGGGTGAACCGAGGTCTAACGTCCTTTGCAGCATTGTGTGGGGGTGGGGGATTTCTTCCTTAGAAATCCCCCTGCTGCACCAGTCCCGGGACAGTCAGTTGGGGATCACAGCTGAATTTCCATACCCCGGCGATTTATCCCAGTACCTGCGCCCACCCATCACAGGGGTGACAACGCCAACCAATCCCTGCAATCAATCAGACCTTTAAGCCCATCCATGCTATCACTATTTACAAATTCTGTGGTGCATGAATGCTCCAACCACGAGGGCCTGTCCTTATTTCAGACTCTTGTCAATGGGGCATGTGACACCAGAAAGCCACACAATATAGTGGACCAGGAAATGGTTGTAGTAACACAGTCCTAGACCCCCCAGAGGTGAGTGGAACCTCGGGGCCTTTGAATACCCATCACTGAGTCAGACATAGGCCTAACAACCCAGGAACATGAAGGCTACTCAGAGGAGGCAGTGAAAGAAAGGGGGTGGAAGGTGCTGATCTCCAGTGCGTGGAACCAAGGGTTCAGTCAGTAAGAGGGTGTAAGATGTTCAATCACGGTAACCTTTGATTCATTTCTGCCCGATTAGAAAATGTGCTGATACCAGGACTTTGTAAGAGTTTGGGAGGACTCAGAGAAGGGAGACCATGCCGTTACATGTGGGAGGTGGGAGTAATCAATGTGGGTAGGAGCAGTGCCCTCTTCCTTCCACTAAGTGTGCACCGCCCACCATGCTCCAGAGGTAATGGAACCCTAAGGCAGCCCTCTATCCTGCTCTGCCTAGAGAGGGTCTGGACAAAGCATGCTTGGGAGCTTTTGCTCATGGAGCCCCAGGCCTGGGAGGCCTCCTGTGCTTGGCAGGTGTCCCAAGCCAGGCTCCTCATTCACCCAATGGTCTCATCTTCATTGCGGCTGGGGAGGGACTCCGGGGAGCTTGGTAGTGGGCGGCCCGCCACCAGCCCTGCACTCATCTGGCTTTCATTATGTCTGGCAGAGTCTCCGGCTTTGTGTGCTGGAAGGGCCTGGCCTGATCACTCCTGGAGGGGGTGTCAGGCTTCTCTCTGGCTCTATCTGACCTCATGCCTGACCCTTTGTGGCAGGGCTAACGAAAGGTTCTGTCCCTGCACAGGTAGCTGCTGTCCGTGCCTCCTCTGCCACCCCTCTCTCCAGGCCTCTGTGTTGTCATGCAGCCTGCTCACTGTTTAGAAATCAGAGGGGAAGCTTCTGGCTGGGGCAGGAAAGCCAGGGTCCTGGCAGGAGAGGAGGCCACAGCCGGAAACTGAACACAATGACCATTTAGCATTCGCCTGGGGGAGGGGCAGGGAAATCCCTGTATTTTGCCAATAATTTCCTCCCATCCCCATCCTGAGGCTGATTTCCTGGTAGCAGACCCGGTCTACGGCCTGAAGTCCCCTCACTCTCTGTCTCTGCCTTCTTCTTCCGTCATTTGTCCCCTTAAGCCTGGGGTTGCCAGATGTCCTCACACATCTGGGCACCTGCCTGCCCTCTCAATTCTAAGTCAAGCCACCAATGACCTAGCTTGACCTGCTCCAGCCTGCTTTAGGGAGGTCATAAGGTTCATGCTTCCGCTACAGGCTTACTTCAGCTTCGTCCTGGCAAGGATCTGTGGATCTGGAGCAGGCACCGGTACCATGTTCCCCGGCTCACACAGACCTCCAGTTTAGATGCCAGCGCCATCTGCCAAGAGGCTGGAGGCAGAGAGGTGAAGTCCCTGACCTAGATGAATATATCGTCAGCAAGGGTCGCAGACGGGACTTGAGCACAAACTGTTGTGTTCCCTGGGATCGGGGTTGGGGTGCCTGCTCCATGTACGAGCTGTGAGCAGGACACAGCAGAGATGGCTAGTGAGCGGTAGCAGCCAGCAAAGGCTATGGATAGAGCTTGACCCAGGCACTGCAAAAAAGGCTTTGGCCAAGTGAGATACGGAGAGGTTTATTTAGAGTCCAGGAGAAGGTGAAAGTACCCCAGATTTTGAGCTCTTGGGAACAATGGCTAGCAGCCGCTAGGGCTTGGTAGCAGAGCCTAGGCTAAATAATTTGCATGCATGTTGTCCTTTGGGGGGGTCAGGGCTATTAATAGCCCATTTAACCAATGAAACAACTAATTAGATTGCGCTCAGCAAACTGGTCAACTGCAGAGGGAGGCCAGGCAGGCTTCTTACCCTGGCAACTTGCCTGTGATGCCTGAAGGCTGTGTGGGTTGGACACAGTGAGGCCAGGGATTCTTCCTCTGGGCTGTCTGGTTTCTTGATCATTCTGTGTGCAGCTCTTAGTTTACCCCAGGGTTCTTTTGTTTCCCTAGACACTGAAAACTCAGAGATATAGGTACATAGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCACGTGTGTGTGTGCATATGTGTGCGCGCGCGCGCGTGTGTGTGTGTGTGCATATGTGTGTGCGCGCGTGTGTGTGTGTGCGCGTGCGTGTGTGTGTGTGCGCGCGCGCGCGCGTGTGTGTGTGTGTGTGTGCATGTGTGTGCATGTGCGTGTGTGTGCATGTGTGTGTGCGTGCATGTGTGTGCATGTGTGTGTGCACGTGTGTGTGCATGTGTGTGTGCGCGCGTGTGTGTGTGTGTGTGTGTGTGCGCGCGTGTGTGTGTGTGTGTGTACACATGATAATCCTCCAGAGGTACTTCCTGGCTGACTCTAAAAGGGCAGCCTTCAGGAACTTCAGAGTCTGTTATGTTCATGAGGAGACTTGCCATCAAAGCTATGCCCCCAGGATCTCCTTCTCCTACGGTTGCTTTCCTCAGAGGCACAGTAGACAAGGATGAGGAGGCCCAGATGGCTGGTACTGGTCCTCTGTCTCCAGTCTGGGACACTGAGAGAGACATGCTGGCCTATTTCCTGGGAGCCTCCGGGCAGCTCTGGAAGCAGGAGGAACCGGATTGCTAGCAGGGACTGACTGTCCAGGAGGTGGTCGGACAGTTTTCAGGATTGTAGGTAGACCTCTCACTGACCCTCAGCTCTGAGGAAGCTTCTGCAGGGGCTTCAGCAGCGCTCTGAAGAGCTCATACTTTGGCACCTACCCTGAGTCGGATTTCTGATGCTCTTACAAATGCTGTGTTCTCAGGCGTGTACCCAAAGGGAGGGAGCCACCTCAGCACAGTGAGAGTGACAGAGATCGACATGAATTGCTTCCTAACGCTGGAGCTAAGGCTCCAAGCAAACTCAGTTCTCCAGAGAAAGGACAACCTGAGGGCTGCTCACTCTAGCAGGGCACAGGGACCAGAACTGCTGGGCTGTGGCTGTTCTGTTGGCACGCTCCCCTCCTTCTGATGCCTTTGCCGGCGGCAGCCGTTGTCCTATGGGTCACACCTGCAGGCAGTCTGTCCTTTTGAACCCAAGAGGCACAGAGCTTGAGCTCTGAGCTCTATGGAAGGCCTCTGTGCTGGAATGCCAGCCTAGCCCCTCTGAGCCCCAGAGTTTCTTCACCTGTAGAACGGACATGTTGCCAGGCGGTGGTGGTGCAACATCTTTAATCCCAGGAAGCAGAGGCAGGCAGATCATGAGTTTGAGACCAGCCTGATCTATAGAATGAGTTCTGGGACAGCCAGGGCTGCGCAGAGAAACCCTGTCTAAAAAACAAAACAAAACAAAAACAAAAACAAAAAAAGGAGTTCTGGAGTGGACCACGTGAGACTAACAGCCGGTAGTGAAGCTAGCCTTGAGGCAGAGCCATTCCCCTGGGCATGTCCTTAAGCTTCTGCTCAGAGGCACGGGTGTGACACCACCGGCCTGGCCACCTTCCACCTGCTTTCTAGCCCAAGGAAGTCATTTCTGTCTTCAGCCTCTCCCCTGCATCTATGTACCTTGGCTGGGCCCTGCCCTGATAGAAGCAGCAGCCAGCTCTGGGTGTGTCCTCACAGGCCAGGGATAAATCCTGGTCCTGACTGCTGTTTCCTAGCTCTACTTGAGCTGGCTTCTGCCTGTCCCTACCTGGGTGTTCCTTCATCTACCAGGCACCATACTGGGCGAGCTACATGCACTAAGTGTACAGAGGACCTGGGACAGGAAGTGCCCGTGTTAACTGGATGGTATGGTGTGAGTCTGACTTCAGCTGGGTCTGTTTTATACCTTGTGAGGACTGGGGCATGCCCCCTTTCAGGCCTGGCCCGATGGTGGCCATTGCAAATGGACAGCAGGGTGGGGGGGTACAAGGCTTTGGATTACTGAAGTGGTGGGTCCCCCCCCCCCATTCGAGCCTAGTTTTCTTTCCTGAAATGCTAACTTGGCCAATAGCAGAACTCAGGCTGACAGGGAGGGTTCCTGGGACCTGAATCTGACTCTGTGGTAGCTCTGCACAGGCCCAAGACACTTCTTTCTGAGGGCTTGGTGCTCCCCTGCTGCCATGGCAACCAGGCACCTTGTACACTCCCTAGCTGAGGCTTCCCCTGATGGCCGAGGGTTGCCATGAGGGCTCAGCATCTAGGCTGTCCACCCAGTGCTGGAGCTGGCATGGAGGGCTCTAATGCTTCATGTTTTCATCTCATCCCTCTGTCAGAGCTTATGGCTTGAGCTTGAGAAGTCTTGGGTTCTCACCTCTCCCTGGACACTGTCTATTTGGCCCCTCCCCTGAACCTTGGTTTCCACCTGTAAAGCAGGAAAGGTGCTCTCCCACCGTGATAAGAGCCTGAGATTGCTCACTGGCATCTGGACCGCCCCCTCTCTGTTCTGGAAGGTCCATTCCAAGCAAGAGCCAGGACTCTGAGTGAGCTGCCATCTGGGTCCAGTAGTCCCGGGTGGTCGGCGGTCCTCTGACAGGTGCAGCGCTCATACATCACCAGTTCTTGTGCTGTACCAGGTGTTGTCTGCCATCCTTGGTCAGCTGCAACCCCTGCTATGTCACCTGCTAGCTGCTGCTGTTCTCTCTCAGCCGAAGGCCAGCTTACTAAGCCAAGCTGGGGAGTGAGACTCCTCCTGAGATACAGTGCATGGGGCTGCTCCTGGGGTCCCTGTGTGTCCAGAGCTGTAGGACGTCTGCAGTACCTGCTGGAGCGCTGGGGTACCCGAGTGACTTGGTGGTCCAGGTAGGTATGGTGAGGTTGGAATCGCCTTGGCTCACCAAGTAGGCTGAGCCTTTGCCCATGGAGAGAGAAGCCGTGATCTCCTGAGCCTCTGCACATGGAGAGAGAAGTTGTGATCTTGTGCTTCAACGTATCTGCTAAGGCTTCCTGTGTCTGACTGGACAGATGACACAGGCCTGGCATCCCATTCTTTTTTTTTTTTTTAATTTATTTATTTATTATATATAAGTACACTGTAGCTGTCTTCAGATACACCAGAAGAGGGCATTGGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAATTCAGGACCTCTGGAGGAGCAGTCGGGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCCCTGGCATCCCATTCTTATTGAGCCCCTTGCTACTTGCTGTCCTGGGCTTGGCCTGCAATGCCCTCGCTTTTAGCTGGTCACATATATCCTATTAGCTTGCCACCTTGAGAACTCTGATCAGGTGACACACCCCATTCTGAGAGCTCTAGGCTATGCTCAAGAGACTGTGGTTGTGGGGGCAGCTTGCTCCCAGGACTCCCGGGGACACTTTCACCCCCAAGTGTGTTAGACACAGCCACCAGCTTCATCCCAGGTCCCTGGGGGCCTTGCACATTTGGGAGGTTGGGGGGTGGGAGGGGATGATCCTCTCTAAGGACACAGCCAACCATGTGGCATTCCTCCCTTGGAGCTCAAAGGCTCCTTGGATGCCTGCCCCAGGCAGGCAGGCAGACAGGCAGACATTTTTGCTGTTTCAGCTGTTTGCCAGGCCAGCTTCCCCCCTCTTCTCCCTGGACTGCTTGAGTATTCCTGGGACACTTCCTACATGGGCTGCCTGCTACAAAAGTAGCCCAAGGTGGCCTTAGGTTACGTGGCCCCTGCCCTTCCAACCTCAGAGGGACCTTGGACTTGGGGGAGAAGCTCTTCTCTGTCGCTTTCTAACCAGACCTGAGCATCTCTGCCTTCTCTGGGTATCTGGTGCAAAGGGGCCTACACTCTGTATGGTGAGGTGGCCTGGTTCATTCCTGCTGTGGTTGTTTGAAGGAAACGGAGTGCATGGGGTTAGCTCCTCAGGCCGGAACAGTTCCCATCTGTGCAACAGGGTGTCAACTCCCCAGAGGAAGGCATGCATGGCGCTCAGCGTCTGTCTGCACCCCCACCCCCATCCAGCTGGCAGAATGGCCCCCCTCAGGTGGGGGAAGGGTGCAGGGATCACATGACACTCCCACAGGGCCCAGGCCAGCTGCTGGGCTATCAGCAGAAGCTCGGGGCTGAGCAAAGCCTTGCCTTGATCCTTGCTCAGGGATGGCGGCTTCTGCTTGCATCCAGCTACTCCTGCAGTGTGCCTGGCTAGGGCAGAGTTCTGTCCTGTGGGCATCAATAAAAACCTGTTGCAAACTAGCCTTGTTCTGGGGTTCGCTGGGCTGAAATCCAGCGTCTCGTGGCAGGAGCTTCATGTGTGACTCTGACTCTGCGGTTGATGCCAGGTATAGCCAGGCTCCTTGGGAAAGGAGGGCTCTTCCAGCCTGAGCCGGTGCAGTGGCTGTTCCAGCACCGTGGTCTCCTTTTTCTCTGCTGAAAGACTTTCTACATGTGGGTCAGAGGTTAGCTGATGACAGTGCCACTGGCCTCTGAAGGGAAGTTCCCTGGGCTGTGGGCCAGGATTGCTTAGGGTCGTGAGCCTTCTTGTTAGCCACTGGCTTCCAGGAATCAGATCCTCTCCATCTTAGTTATAACCCTTCCCCAGATGGCAGGAAGGAGAAGCCTGGGGTTTAGGGGAAGCGAGTGTTTCCTTTCTGCTCTAGGCTCTAGGCAGCCACATGACTCCCTCCTTCCCCAAATAGGCCTTGTGATTTGGGGTTCTGTGGATCCCCAGCACTGTTGCTGTTCCCTACTCACGTGAGCAAGAACAGCCGCTAGCTGGGAACCCCCTTGTTGCTCAACAAGTCTCAGAAGCATGAATGAGCAGAAGGGGAAGGAAGTGGCCTCAGATGTGGTCAGCATCCGCACCTTGCCTAGACCCATTATGCTGACTCGAGCGCTGGGCTGGAAAGAGCTGCCTGATGGTGCTTGGTCAGCCTGGAACCTCAGACTGCACAGAGATGAGAGTGCGGGTGACCCAAGCCCTGGGCTCTGGGGACTAGGTTCTTCTGAGGGTCAGTGCCACCTGTGACCATACTAAGGCCTTAGGATAGAGGATCTGTCATATACACAAGACAGTTTGACTACCTCGGCCTCCACTTACCCTTCTCTGAGATGGGTGAATAACAGTACCTGTTCAGGTATACTGGGGTAGGGCTGTCCAGTACGAGGCAGGAGCAGGTTCCTGAGGTGTTGGCCTTATGATCATGAGGAACCAGGTGGGGAGGAAAGTTCTGGGCTCTCCATTTTCTTTACCCTGGAAGTCCAGGAGCCCCGTCTGTGCCATCTCCCTGCAGCAGACCCCTGATGTCCTGGCCTGACTCCTGGACCTTGTCTTTCCAG
Seq C2 exon
AGCTCTACGCAGGAGATTGGGGAGGAGCTGATCAACGGGGTCATCTACTCCATCTCCCTGCGCAAGGTTCAGCTACACCCAGGAGCCACCAAGGGCCAGCGCTGGCTAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010219:ENSRNOT00000013809:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]