MmuINT0131341 @ mm9
Intron Retention
Gene
ENSMUSG00000026821 | Ralgds
Description
ral guanine nucleotide dissociation stimulator [Source:MGI Symbol;Acc:MGI:107485]
Coordinates
chr2:28388984-28396341:+
Coord C1 exon
chr2:28388984-28389253
Coord A exon
chr2:28389254-28396230
Coord C2 exon
chr2:28396231-28396341
Length
6977 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
CTTGGGCCTTGTCTTTCCAGAGC
3' ss Score
9.67
Exon sequences
Seq C1 exon
AGGCAGCGCGGAGCCGCGCCGGCCCTGCGCCCCGCGCTGCCCCGGGTCTCGCGGCCCGCCGGCCACCCGCGCCACCGTGAGTCGTCCATGGTGCAGCGCATGTGGGCTGAGGCGGCCGGGCCCATAGGGGGCACCGAGCCGTTGTTTCCCGGTTCCCGGCGCAGCCGCAGCGTGTGGGACGCCGTGCGCCTGGAGGTGGGCGTCCCCGACAGCTGCCCAGTGGTGCTGCACAGCTTCACGCAGCTCGACCCTGATCTGCCGCGCCTGGAG
Seq A exon
GTGGGTGAGCCCAACGTCCTTTGCAGCATTGTGTGTGGCTGGGGGGTTCCTTCCTCAGAAGTCCCCCTGCTGTATCAGCCCTGGGGCAGCCAGTTGGGCATTACAGCTTCCAGCACACCCTCAGCAGTAGGTGGGGAATCAGAGCTGAATTCCCGTGCCCCCTCAATTCATCCCAGTACCTGCTCCCACTCATCACAGGTGTGACAACCCCAATTACTGCAGTCAGTCAAACCTTTAAGCCCCTCCATGCTGTCACTATTTACACGCCTGTGGTGTGTGAATGCTCCAACCACGAGGGCCTATCCTCATTTCAAACCCTTGTCAATGGGGCGCGTGACACGAGGAGGCCACAATATAGTGGGCCAGCAAGTGGTTGTGGTGGCACAGCCCTAAACTCCCCAGAGGTGAGTGGGACCTCAGGGGCCTTTGAATACCCATCACTGAGTCAGACATAGGTCTAATGACCCGGGAACATCGAGGCTGTTCAGAGGAGGCAGTGGCAGGAAGGGAGTGGGATGGGCTGGAAGATTCAGAGACCATGCCCTTATGTGTGGGTGGTGGGAATAGTGAATGTGGGTAGGAGCTTGTTTCTAGTGTCCTGGGCAGGGACACCCAGCAGTGCCCTCTTCCTTTCACCTTAGTGTACACCTGCCACCATGCCCCAGGGGTAGTGGAATCCCAAGGCAGCCCTGCATCCTGCTCTGCCTAGAGAAGGCTCAGACAAAGCATACTCGGGAACTTCTGGTCATGGGGCCCCCAGGCCTAGGAGGCCTCTTGTGCTTGGCAGGTGTCCCAAGCCAGGCTGCTCATTCACCCAGTGGTCTCATCCTGGAGGCGGCTGGGGAGGGACTCCGGGGAGCTTGGTGGTGGGCGGCCCACCACCAGCCCTGCACTCATCTGGCTTTCATTATGTCTGGCAGAGTCTCCGGCTTTGTGTGCTGGAAGGGCCTAGCCTGATCACTCCTGGAGGGGGGTGTCAAGCTTCTCTCTGACTCTGTCTGGCTACATCCCTAAGGACCCTTTGTGGCAGGGCTGTTGAAAGGTTCTGTTCCTGCATGGGTTGCTGCTATCTGTGCCTCCTCTGCTGCCCTCTCTCCAGGCCTCTGTGTTGTCATGCAGCCTGGTCACCGTTTAGAAATCAGAGGGAAGCTTCTGGCTGGGTCAGGAAAGCCAGGGTCCTGGCAGGAGAGGAGGCCACAGCCGGAAACTGAACACAATGACCATTTAGCATTCGCCTGGGGGAGGGGGCAGGGAAATCCCTGTCTGTTTTGCCAATAATTCCCTCCCATCCCCATCCTGAGTCTGGTTTCCTGGTAGCAGACCCAGGTCCAGAAATGAAATCAATCCAATTAAGGTCCCTGCACTCTCTGTCTTTGCCTTTCGTCTTCTGTCATTTGTTTCCATCAGCCTGGGGTTGCCAGATGTCCTCACACATCTGGGCATCTGCCTACTCTCTCAGTTCTAAGTCAAGCCACCACCGACCTAGCTTGACCTGCCCCAGTCTGCTTTATAGAGGTCACGAGGTTTATGCTCCTGCCACAGGCTTGCTTCAGCTTCATCCTGGCGAGAGTGACTGTGAATCTGTAGCATTCACAGGCAGCAGGCACCAATACCGTGTTCCTCCCGGCTCACACAGACCTCCAGCTCAGATGCCAGTGCCATCTGCTAAGAGGCTGGAGGCCAGAGAGGTGAAGTCCCTGACCTAAATAAATACATTGTCAGAAAGGGTCGCAGACAGGACTTCAGCACAGTGTTCCCTGGGGTTGGGGGTAGGGTGTCTGGTACATATAAGATCTAGAAGCAGGACCCAGCAGAGATGGCTAGTGAGCAGTAGAAGCCCGCAAAGGTCGTGGATAGAGCTTGACCCAAGCACTGCAAAAAAGCCTTTGTCGGGTGAGTGATGGGGAGGCTTAGAGTCCAGGAGAAGGTGAGAGTACCTCAGATTTTGAGACCTTGGGAACTGTAACCAGGGGCTTAACATAAAAGCTAACAGCCGCTGGGGCTTGGTGGAAGAGCCTAGGCTAAATAATTTGCATGCATTTTGTCCTTTGAGGGGTTCAGGGCTATTAATAGCCCATTTAACAAATGAAACAACTAATTAGGTTGCACTCAACAAGCTGGTCAACTGCAGAGGCCGAGGCCAGGCAGGCAGGCGTCTTATCCTGGCTGCTTGCCTGTGTCGCCTGAAGGCTGTGTGGGTTGGACACAGTGAGGCCAGGTTTCTTCCTCCGAGCCGTCTGCTTTCTTGATCACACTGTGTGCAGCTCGTAGTTTACCCCAGGGTTCTTTTGTTCCCTTGACCCTGAAAACTCAGAGATATAGGTACATAGTGTGTGTGTGTGCACGCGCGCGCTCGTGCGTGCGTGCGTGTACGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACACGCGCACGCTCGCTCGCACAAGATAATGTTCTAGAGATACTTCCTGGCTGACTCTAAAAGGGCAGCCTTCAAGAACTTTAGAGCCTGTTGTGTTGGTGAGGAGACTTGCCATCAAAGCCACGCCCCCAGGGTCTCCTCCTACTTACAGTTGCTTTCCTCAGAAGCACAGTAGCTGAGGATGAGGAGGGCCAGATGGCTGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGATGCTGGCCCATTTCCTAGGAGCCTCTAGGCAGCTCTGGAGCAGGAGGAACCAGATTGCTAGCAGGACAGGAACAGGGACCTCCTGTCAGACAGTTTTCAAGACTCTGGATAGATCTCTTGCTGGCTCTGACCGAGGAAGCATCTGGAGGGGCTTCAGCTTCACTCTGAAGGGTCTCACAGTTTAGCACCTGCCCTGACCCGGACTTCTGATACCCTCACAAATGCTGTGTTATCAGGTATATACCACAGAGGAGTGAGCCAGCCCAGCCCAGTGAGAGAGAGCGATTGAGATGAATTGCTTCCTAAAACAGGAGCTGGGGCTCCAAGCAAACTCAGTTCCCCAGAGAAATGACAGCCCGGGGGCTGCTCACTTGAGCAGGACACAGGGACCAGAACTGCTGGGCCATGGCTGTTCTGTTGGCATGCTCCCCTCCTTTTGATACCTTTTCCTGCAGCTGTTGTCCTACAGGTCACACCTGCAGGCCCCATCTGTCCTTTTGAACCCAATAGGCAAAGAGCTTGAGCTCTGTGGAAGGCTAGCCCCTCTGAGCACCAGTTTCTTCATCTGTAAAATGGACATGTTGCCAGGCAGTGGTGGTGTACGCCTTTAATCTCAGGAAGCAGAGGCAGGCGAATCTCTGAGTTTGAGGCCAGCCTGGTCTATGGAGTGAGTTGAGAAACCCTGTCTTGAAAACCAAAACCAAAACAAACAAACAAAAAGGAGTTGTGGAGTTGGCCACGTGAGACTGACAGCCAGCAGAGGAGCCAGGCTTGCAGGATCCATTCCCCAGGACTCGTCCTTAAGCCTCTGCTCAGAGGCACCTGTGTGACGCCACCAGCCTGGCCACCTTCCATCTGCTATGTAGCCCGAGGAAGTCATTTCAGTCTTCAGCCTCTCCCCTGCATCTGTGTACCATGGGTGTGTCCTTACAGGCCAGGGGTGAAATCCTTGTCCTGGCTGCTATTTCCTAGCTCTACCTGTCTACCTGGTGTCCCTTCATCCACCAGGCACCACACTAAATTACATGCACTAAATATACAGAAGCTCAGGGGCAGGAAGTGCCCGTGTTAGCTGGATGGCATGGTCATGGGCTGGCGTGAGTCTGCCGTCAGCTGGGTCTGCTTTATACCCTGTGAGGACTGGGGCGTGCCCCCTCCCACACTTGAGTCTAGTTTTCTTTCCTGAAATGCTAACTTGGCCATTAGCAGGACTCAGGCTGACAGGGAGGGTTCCTGGGACCTGAATCTGACTCGGTGGGAGCTCTGCACAGGCCCAAGACTTTTCTTTGGTCTTGGTGCTCTCCTGCTGCCATGGCAACCAGGCTCCTTGTGCAGTCCCTAGCTGAAGCTTCCTCTGATCACTGAGGGCTGCCACAGAGGCACAGCATCGAGGCTGTCCACCCAGTGCCGGGGCTGAGACAGGGTTCTAATGCTTGATGTTTACATTTTACCCACTCCTTTGGAGCTCATGGCCTGGGCGTGAGAAATCATGGATTCTCACCTCAACCCTCCCCTGGGCTTTGTTTCCACCTGTAAAACTGGAAGGTGCTCTCCCTCCATGACAAGAGCCTGAGATGGCTCACTCGAATCTGGACTGCCCCTCCCTGTTCTGGAAGCTCCTTTCCAAGCATGGGGTAGGACTCTGAGTGAGCTGCCATCTGGATCCAGTAGTCCAGGTGGTCCTCAGGCAGGTGCGACTCTCGTACATCACCAGTTCCTGTGCTGTCCCAGGTGTTGTCTGCCATCCTTAGTCAGCTGCAGCCCACACCGTGCCACCTGTTAGCTGCTACTGCTGTTCTCTCAGCCCATGGCCAGCTTGCTGAGCTAAGCTGGGGAGTGAGACTCCTCCTGAGATACAGTACCTGGGTCTGGTCCTGTGGACTCTGTGTGTCCAGAGCTGTAGGGGATCTGCAAGGGACCTGCTAGAGCCCTGGGGTACCCTGGTGACTGTGGTACAGGTAGGTGTGGTGAGGTTAGAATCACCCGGCCTCTGCACACATAGAGAGAAACTGTGATCTCATGCTTGAACTCTACCACATCTGCCAAGGCCTTCCAAAGCAGAAGCAGCAGTGTCTGCCAGGCCCGGCCACCACCACCACCCAGTGCTCTCTAGGGAGATATGACACAGGCCTGGCATCCCCATCCTTATTGAGCCCCTTGCTGTTCTGGGCTTGGCCTGCAGCTCTCTTTCTTTTAGCTGGGGACATACATCCTGCTGGCCTGCCACCCTGAGAACTTTGATCAGGTGACACACCTCATTCTGGGAGCTCTGAAGAGACTGTGATTGTGGGGACGGCTTACTCCCAGGACTCCCAGGGACACTTTCACCCTCAAGCGACAACAGCCAGCTTCATCCTAGGTCCCTGGGGGCCTTGCACATTTGAGGGCCTGGGGGGGGGGGGCGGTGTTGGGAGGAGATGATCCTCTCTAAGGACACAGCCAACCATGTGGCATTCCTTTCTTGGAGCTCAGAGGCCTCCTGGATGCCTGCCCTAGGCAGGCAGGCTGGCAGACATCTTTGCTGTTTCAGCTGTTTACCAGGCCAGCTTACCCCCTCCTCTCCCTGGACTGCTTGAATATGACACTTCCTACATGGGCTGCCTACTAGAAAGGTAGCTCAAGGTAGCCTCAGGTTACATGGTCCCTGCCCTTCCAACCTCAGAGGGACCTGAGGATAGCTCCTTAGACTGGGGAGGGAAGCTCTTCTCTGTTGCTTTCTAACCAGGCCTGGGGTATCTCTGTCTTCTCTGGGTATCTGGTGCAAAGGGGCCCACACTCAGTATTGTGAGGTGGTCTGATTCATTCTGCTGTGATTGTTTGAAGGAAGCAGAGTGTATGGGCTTAGCTCCTCATGGCTGGAACAGTTCCCATCTGTGCAACAGGGTGTCGGCTCCCCAGAGGAAGACATGTATGGCTCTCAGAGCCTGTCTGCACCCCCACCCCCATCCAGCTGGCAGAATGGCCCCCCCTCGGTTGGGGGAAGGGTACAGGGATCACATGACACTCCCACAGGGCCCAGGCCAGCTGCTGGGCTGTCAGCGGAAGCCCAGGCCAAGCAAAGCCTTGCATTTGAGCCCTGCTCAGGGATGGCCACTGCTGCTCGCATCCAGCTATGGCCGCGGGTGTGCCTGGCCAGGGCACATTTCTGTCTAATGGGCATCGATAAAAACCTGTTACAAAGTAGCACTGTACTAGGGTCCCCAGGCTGAACCCCAGTGTTGTATGGCAGGAGCCTCATGTGTGACCCTGACTCTGCTGCTGATGCTGGGTACGGCCAGGCTCCTCAGGGAAGGAAGACTCTGCCAGCCCTGACTTTTAAGAACGCTGAGCCGACACAGTGGGTGTTCCAGAGCCATGGTCTCCTTTATCTTTGCTGAAAGACTTTCTAGATTTGGGTCAGGGGTTAGCTGATGACAGTGCCACTAGTGTCTGAAGGGAAGTTCCCTGCGCTGAGGAACACATGACACTCCCACAGGGTCCAGGCCAGGATTGCTTAGGGTCATGAGCCTTCTTGTTACCCACTGACTTCCAGGAATCAGGTCCCCTCTATCCCTTCTCCAGAGGGCAGGAGTAGAGAGAGCCTGAGGTGCAAGGAAGTGAATGTTTCATTTCTGCTTTAGGCTCTGAGAAGCAGTCACATGACCCCCTTCTCCATATAGGCCTCATGATTTGGGGTTCTGTGGATCCCCAGCACTGTTGCAGTACCCCACTCACTCACATGAGGAAGAACAGCCAGCTGGGAACCCCCATGTTACCCAAGAAGTCTCAGCAGCATGAATGAGCAGAAGGGGAAGGAAGTGGCCTCAGATGTGGTCAGCGTCTGCACCTGCCCTAGAGCCATGGTGCCGACTCCAGCACTGGGCTAGAAAGAGCTGCCTGCTGCTGCCTGGTCAGCCTGGAACCTCAGATGGGACAATGAAAGAAGAGTGTGGGTGACCCTGGCCTTGGGTTCTGAGGCCAGTGCCACCTGTGACCATGCTAGGGCCTTGGCATAGGGGATCTGTCATATACACCAGACAGTTTGGCTGCCTCAGCCTCCACTTACCCGTCTCTGAAATGGCTGAATAACAGTACTGTCCAGGTAGACTGTGTTGGGCTGTCCAGTACTAAGTAGGAGCAGGTTCCTGAGATGTTGACCTTAAGGTCGTGAGGAGCCAGGTGGGAAGGGGAGTCCTGGCTCTCCATTTTCTTCGCCCTGGAAGTCCAGAAGCCACCTGTCTGTGCCATGCCCCTATAGCAGACCCCTGATGGCCTGGCCTGGCTCTTGGGCCTTGTCTTTCCAG
Seq C2 exon
AGCTCCACGCAGGAGATTGGGGAGGAGCTGATCAACGGGGTCATCTACTCCATCTCCCTGCGCAAGGTCCAGCTACACCAAGGAGCCACTAAGGGCCAGCGCTGGCTAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026821-Ralgds:NM_001145835:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: