HsaINT0136998 @ hg38
Intron Retention
Gene
ENSG00000160271 | RALGDS
Description
ral guanine nucleotide dissociation stimulator [Source:HGNC Symbol;Acc:HGNC:9842]
Coordinates
chr9:133112042-133121176:-
Coord C1 exon
chr9:133120972-133121176
Coord A exon
chr9:133112153-133120971
Coord C2 exon
chr9:133112042-133112152
Length
8819 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
GCCGGGCGTTGTCTTCACAGAGC
3' ss Score
8.58
Exon sequences
Seq C1 exon
GCGCCCGCGCTGCGAGCCTTCCATGGTGCAGCGCATGTGGGCCGAGGCGGCCGGGCCTGCTGGCGGCGCCGAGCCGCTGTTTCCGGGCTCCCGGCGGAGCCGCAGCGTGTGGGACGCCGTGCGCCTGGAGGTGGGCGTCCCCGACAGCTGCCCGGTGGTGCTGCACAGCTTCACGCAGCTAGACCCCGACCTGCCGCGCCCGGAG
Seq A exon
GTGGGTGAGCTGGGGCGGTCGGGCGGGGGGTGCGTCGGAGCCTCCCCACCCGCGGCAGAGCTGGGCAGGTCGGGGCGAGCCCCGGACGGGGCCGGGCGATCCCAGCGGGCCGCCTCCCTCCTCTCTCCTCCATAGGTGGGGGTCGGGGCCTTCTGCAGAAATCAGCCAGCAGGGTGGGCAGTGGGGGCTGCCGCCGCGCCCCGTCCAACAGTAGGGACCACGGCTGGGGTTTTGCGCCCCTCAATACCGTTCCAGGGCCTGCTGTCACCAAGGCCGCTGCAGCCCAGGTGGACCTTTTTCTGCGGCACTGTCCCTGTTTACATCGGTGGCCTGTGCCTTATTTCACTCAGTTCCCACCCAGGGCCCGCAGCGCGTCGTTAGCCTTTACGATGCAGGTGTGGAACAAGTGGTCGGGAAGGCCAAATCCTAGAATCCTCAGAGGTGATGAGACCATAGGGGCCTTCCAGACAGACCCTACTTGGGGCAGATGTGGATCTGGTGACCAGGGACATCGGGGCTGCTCAGAGCGGGGTGGGGGGGGGGTCGGGGGATGGGGTGGAGCAGCAGGCCTCCAACACGTGGGACCAGATGTCCTGGTGGTGAGGGGAGGAGGGTGGCCCAGGCCCAGGGCGGGCAAGACTTGTTTCTGCTTAACTGGAAAGAGTGCCAACACCCTGAATCGGTAAGGACTGGGTAGGATTCAGAGAAGGGAGTGGTGTACCTGTGATGGATGGAGGGGAGGGTGACTAGGTGAGGGCGGGGGCTTGTTTCTCGTGTGCCCTGGGTCTCTGGGTGGTGCCATCTGCCTCCCACCTGACTGCTGCTGACTACACAGCAGAGGGAGTGGAATCCAGAGATGCCCCCCTCGCCCTGCTCTGCCTGGGCACAGGGCCTGCACAGAGGCCATTCCTGGATCGGGGGCTCAGGGCCCATCAGAGCTTTGGCTGGGCTGCAGCCTTCACAGTGAACCTCCTGAGTCCCCGTGCGGCATCGTGTTGCCTTGCTGCGTCTCCAGTCGCTTCATGGCTTTAGACTGTGGCGCGTTGTGATTGCTGGCGATTGTTAGCCTGAGTCTCGTGCCTCTTGGTGTCCCGGTACCTAGACAGGGCCTGGATGCGACTTGTTTCTCCGCCCAGTGTTGGGCAGAGCTCTTGGTGGGGGAACACCACACGCCTGAGAGACCCTTTCCTCCTGAGCTTGGCAGATGGCCGGACCAGACGTGTTCCCTCAACCCTCATCTATCCAGGGCTCTGGTCCTCATTGGCGGCTGGAGAGGGACCCCTGGGAGGGTGGGGGTGGGAGGCTGACACCAGCCCAGCGCTCATCTGGCTTTCATTACCTCTGGCAGCAGCTCGGGCTTTGTGTGCTGGGAGGGTCCGGCGGAGCGCTCACAGTGGCCGTGCAGGTTCCCTCTCTCCGTCCCTGAGGAACTGAGGGAGAGGCAGAGCTGAGCCCCACCCCTGCCTGGGGGTCTTGTCTTCCCTCTCTCTGGCCCTGGCGCTCCTTGCCCAGCCTCAGCACTGAGATCCAGACCTCGACTGCTATTTAGAAATCAAAGGGGAAGCTTCTGGCTGGGTCAGGAAAACCAGGATCCTGGCAGGAGAGGAGGCCACTGCCGGAAACTGAACACAATGACCATTTACCAAGGGCCCAAGGGAGGGGGCGGGGAAGTCCCTGTCCCTCCTGCCAACACCCCCCGTCCTGGGGCTGGTTTCCTGGTGTCTATGTGGCCTGCCAGAGCTGACGCTGCGCACTTGGTCCCTGTCCTCTCTGGAAACCACCAGACAGTTTCTGCCTTCCCCCGCATCCCTGTTTCCCTACCTAGCTTCCACCCGGTGCTTCCCTCTGGGCTGCCAGATCTCCTCACATCTGGGCTTCCGCTTATCTTCCCGATTCTAAGCCAAGCCACCAATGACCCAGCTTGGCCTGCACAGTTCTTGCTTTCTGGAGGTGACCTGGTCCGTGCCCCCATCTCTGGACAGGCTGTTGCTTTGGCCAGACAAAAAGTGCAGGTTGTGGGCCACCCCCTCACTTCATCTGCCTTAGACCAACCCTACAGAGTAGGTGCCAACACCACCTTCTAGGAAGCTAGGGGGTCAGAGAAGGGAAGTCTCTGACCTAAACACCCGTGCAGCCAGCAAGGGCCGCAGCCAGGATTTAAGCATGGGCTGTGTTCTCTGTGGCACCTACTGTGTGCAGGAGCCACCAGGAGTCAGAGGAAGCCCAGGCAGCCCAGAAGCCCTGAGGTCAGGTGAGCAGTAGGGAAGCTTATGGCTCAGAGGAAGGCAAAAGTGCTTTGGGCCACAGGACGCTGGGGAGAGCTACCTGGAGGAAGCAAGCCCAGAACTGGACCCCACAGGTTTAAGATAACAGCTAATAAGAGCCAGCAGGTTTTGGGGAGGTCCTTGGCTAAGTAATTTGCATCATCTCCTTTTGGGGTCAAGACTGTTAAGAGCTCACTTGACAGATAAAGTCACTGAGGCAACAGAGGTGAATTAGATTGCACAGAGTGACCAAGCTGGTCAGTGGCAGGGCCAGGATTCTGACCCAAGGCCTGAGGGCAGTTGCAGGTGGGCTGGAGTGAAGAGGGCTTCTCTGTATTCACAGGGAGCATCTCCCTTCAGCCTCCCGCGTCTTCCCACTGTTTGATCTCTTGATCACACTGTGTGCAGGTCTTCGGTTTAATCCCCAGGGCTCATGAGCACTTTGACACTGAAGACCCCAAGGCAAAGGGCCTGTCCCTGTGTGGGTGTGTGTCCCTGCATGCATGTGTACAGACTGTGGTCTTCCAGGAGAGCTTCCTGGGTGACTCTGAAGGGGCAGCCCCCAGGACCCTCAGGTTCCCCTCTTGCTCTACTCGGGAGGGTCCCCCAGAAGAGGGGGACCAGGCTGGCTGGTCCTGGGTCTTTGTTCCTTCTCCAGGCGGGGGATGCTCAGGCATGCTGGCCTGTTTCCCGGGAGGCTCAGGAATGGCCCTGGGAGATATCAAGCTGCTCGTTGCCAGAGCTGGGGTCTGATTCTTAACCTGGAAATTGGGCATTTCCAGGACCTGTCTGCGTTGCCAATGAGAAAAGAGTGGGGAGATTTATCACTGGCCCTCTGCAGGCAGGCTCTGAACGAGCCAGTGGAGCGGTTTCAGGAAGCTGCACCCAGGCAGTCAAGGACTGGTTCCCAAGAGCTGCTGGTTGGCCGCCCAGATGGCTCCCATGGCGTGGTGCCACCATGCTGTGGCCACCCAGTCCCAGGGTTGGACTTCCAGCCTTGCAGGCCCAGAATCACTGTGTTCCCAGATATACAGCAACAGCAGAGCAGTGTTCCCCATTTGATTGTTAAGGGGCAGACACTGATGCATGCAGCCTCATGCAGGACAAGCTGAGCTTTGAGCAGACCCAATTCTCCCAGTTCCGCACACCTTGGCTGCCCACGGGCGGGGGAGGCAGTGGGATGGCAGCCCAACAGTGGCTTGGCGGGCGGGGCAGGACACCTGCGTTGGAGGGTTTTGGCGTTTTCCTCCATGGGGAAGCTTGCATGCTTTGGCAGCCTCCCCTGTAGTCATTCCTGGAGACTTTTGTCCATCTCAACCGAGGGGCAGGGAGCCTGGGCTCTGGAGAGAAGAGAGCTATGCTGGGATGCCAGCTCAGCCCCCTAGCAGATGTAGACGTGCTCCTGAGCCTCAGTTTCCTCATCTGTAAAATGGACATGATGCCAGCTCTCCTGTTAGGGTTCTGGTGAGGACCCTCGAGTTAGACAAGAGACCTGAGGAGCAGCCTGCACAGCACTTGGCACAGTGGACAGGTAGCAGCTGCCACAATGAGGTTTTCTGATTAGGTGCCAGGGGAGCGGCCTGACCCTTCCAAGTGCCCTGGGCTCCTCGGGTGCGTCACCTGGCACCTTCAGCATGGCACTTCCCTGGCCTGGTGTCTTGTAGGCCTTTTGCCCAGGGCACGTCCACAAACCTCTCGGAGATGCAGGTGCTAGAAAGCTGGCCCTGCCACCCTCCCCTGCGAATTTGCTGTGTGACCTGAGGAAATCCTTCCTGTCTCTGGCCCCTCCTCCACATCTGTGCCACAAGGGGCTGGACTCTGCTCCAAGCCTGAGACCATGGCAGAGGCAGCGCCAGGCCTGGGTGGGTCCCAACAGGCCAGGGTTCAAATCCCTGTTCTGGCTGCCACGTCCTGGCTCCTGACCTGGGCGAGTTCCTCTCAGGCTGTTTCCTTGTCCATCAGGCAGGGCGTTAGGAGGATTAAACGTGATGGGTGTCCAAAGGGCCTTGCACCCAGGAAGTGCCCGCATGTGCTGGGCACTGTAGCTGGTTAAAGTTGGGGCTGCCCTGCACCCCCTTGGGACCAGCCCACCTTCCTCCTCAGCTGCCACCAGCCACGCCCCTCCCGGGCCTGGCCCTGTGTTCACCTGACTGTCAGGGGCTGGGCGTGGACAGGGACCCTGGATGCCCAAGGCTTGCGGCTGACCTGGAGGTCTGGTTCTCCCTCCTCCTGCTTGAGGCACGATTTTCCCATCAGTGAGTAGCAGGGCACAGGCCGGCAGGGAGGGTTTCTGGAGAGATGGGCCGGCCTTTGCGGGGCTCAGCACTGGTTGGTTCCCAGCCTCCACTTTCTGAGGCCAGGGAGCATCCTGGTGGGCAGGCACCGCGTGTCGTCCCGGTCTGAGGCCGCCTCTGTGGGCTGCCATGCCCAGGATCAGGAGTGTGGCCCACCCACACCCCGGGCTGGCCTCCTGTCATCTTGATGCTTTGTCTGTGCGCTGGGGATCAGGGTTGGGTCCACCCACCTGGAGCTGGAGGGCAGGCCCGAGGGCAGGAGGGTCACGGACACGGACACGAGGCCCTTGCGTTCCACCTCCCTTGATGGGGCTCATGGTCCGAGCTCATGACTTGAGAAGTCCTGGGCTCTCACCTCTGGCTCAGCCAGCACACGCCCCACCGGCTCCTGTCCTCGGGCATGGGTCCCCACCTCTGTAGGACGGAGAAGGGCACAGCAGCGTGGGCCCCGCACTGTCGCAGGAGCCTGGGCTCTGTAGAGAGCGAGCAGCCTTCTGTGATGCGTTTTACGTTTGGCTTCTGTATTGGAGCGGAAAGCTGAAGTCAGAAAGCTGCTCCCACCCACTGGGTTTCAGGGTGACTCAGCCTCTCTTTACAGTGTCCCTCGGCTAGGTCCCTGAGCCTTAGGCAGGCCTCAGACAAGTTTCCCTCAGGTTTTTACAGCCCAGCATCCGTCGCCGGCCCCAGGGGGATATGATGTCAGGTGTTGTCCGGTACCACGCCATCAGGTCCCAGTGCCGGTCACCGAGCTGTGTGCATTCTCTCTTGACCCCCACTGTTGCCTGTGACAGGTAGTGCTGCCCTCCCCAGATGACACACCAAGGCCGAGGGCCAGGGGCTGGGCAGAGCCAGCGAGAGACAGGGAGCTGCTGTCTGGTGGGCCAGAACTGTGAGGTGCTGGCAGGGGGGTGGCAAGCACCCCGGGGTGACCTCTGGTGACTGGGACCTGAGCAGCAGCTCAGAGGGGCTTGGGAGGTCCCCCAGGACAATCTCACGCACACGGAGGCTCTGCCGTGAGCCTTTCCACACACAGGCCCGGGGAGGACCAGGGGCGGAGCAGGCCGAGGTGCAGGCTAGAGCCCTCTCCTCACTCCGCTTCAGCCCTCAGCCAGGTCTCCTTGGGAGGGGCCGGTGAGTTCCTGGAGCCATCCATGGGGCAGGGGGCCACTAGCTACGGTTTCCAAGGAAAGGCGTCTGAGTCCGGAGCTGCACCAGAAGGCTGATGCTGGGAGGAGGTGCCGTTGGCCTGAGCGGGGAGATGGCAGGGCTGGGGCAGGCCCCGTAGGGTTCCTCAAGACCCTCACTATTCTACCCAGAGGGAGTCTGGGTTTGGCCTGTGGCTTCCTCCTTCTGTCAGCCAGGGACACGGCATCCTGCTGGCCTGTCACTCTGAGAAGGCTGATCAGGTGACACACTCACCAGACACCACCAGGCCCTGTTTCCCATCCTCATCTTCAGGGCTCTGGGCTGTGTCCCTGGAGACATTGGGGTGTGGGGGCCCCTGCTCACCGGGGACCCCATGCCACCCTCACTGCACTGACCCAAATGTTAGAAGGCCAGACAGTGTGTTTACAGGCACAGCTGCCGACTGGGTCCCAGAGCCCAGGGACATCAGCATGCCTGCTAGGGGTGGGACAGGAGTGTCCCTTGAGGACACAGCCAAGCACGTGGTGTTCTTTTCTCCTCCTAGCAGTCAGCTCATAGCGGCTGCCTGGGCACCTGCCCTCAGGGGAAAGCGTTTTCTCTGCATCAGCTGTTCACTAGGCCGTTCCTGCTCCTCCCGCTCTGAGCTCCCAGCCCGGCCAGAGTGCCCTGGGGCCCAGGCGCTGCCCAGATGGGCTGTCTGCTAACAGAGTGACCTAGGGTGGCCTGTGGGTGCTGGAACCCTGCCTTTCTTGCTGCAGAGGGTTCTGGGGCAGCTGCCAGGGCTGTTGGCTGCTTTCTTTCTCTGTCCTGTGAGGGGGCAAGGGATAGAGGCCTTACTCTGCCACTTTGTTCCCAGACCCCAGGGCAGCTCTCTCTGGAGCCTGCACCTCCACCATCTGAGCAGATGGTTTAAACAGCCCCTGTACTCCACGTAGCTCTATGGTCTGGTTCCATGCCTGCTGCTGCTGTGACGGGAAGCGACCAGAGAAGACAGGCCAGCTCCACGCGGGCTAGAGCGTCTCCCCGACTGTGTGACAGGGTGGCAACTCCCTTACCCCAAGCATGCATGGCTCTCAGTGTTGGGCCTGCATCCTTCCCCACCACCCGGCTGGCAGAAGAGGGCCCCCCGGGGGTGGGGGAAGGGTGCAGGGATCACATGACACCAAGCAGGGCTGGGCCAGCTGCTGGCCTGCCAGCTCACGGAGGAGCCGCTCTCTAGACCTGCTCAGGGACAGCCGAGGCCACCTGGCTTCAGCCCCTCCTGGGGATTGGCCTGCCTGGGGACACCTCTGTCCAGCAGGCACTGATGGTGCTCAGCCAGGACCTGGGTGCTGTGCTGGGCTCCCCCAGGGTTAATGTTTAGTCCCCTGTGGCGGGCTTGTCCTGCACGAGATCTCAGAGCCACTGCCGGTGACTTGGACACTCAGGATACTGTCTGCCTCCCAGCTGGTCCAGATGTGGCTAAAATCCCTGGGAGAGAGAGAGACTCCCAGCTGAGCCAACGGCCTTCACAGGAGGCAGTCTGGGACCCCTGAGGAGGCCCGGGTGGTTGGGGGCCCTGGTCGCTGTAACCTCTAATGCTTTTCTTTTCAAAGGAACAACTTTCTAGGCAGGGGAGAGATGTGTGAGTCAGGAAAAGGGGGGTGAGCGTATGTCTCTTTTCCTGTCAGTGGAAGGGCCAGACCTCCCCTGGCGGGGCTGTTTGTGGGGTGTGGGTGTGAGTGTGCCTGTGGGTTCCCTGCTAACTTCCAAGAAATGGGGCTGGCTCTCTGTCCAGAGGCGGTGGCGGTCAGGAGCCCGGCACAATGCCCGCAGCTTTCCTGTTGTACAAAGCCCAGCGTGGGAGGCGACCTCAGGTCGGAGGAAGTGGACTTCCAGGATGGCTCCTGGGCCTCTGAGGGTGCGCAGGAGGCAGGAGGCCAGGGTCCCGTCCACAGCATGCTGGACAGTCTACCTGGCTCCTGCTGGGGTTGAGGGAAGGGCCTGAGTCAGCACTGTCTGCCAGGCCTTCTCTGAGCTCCACGCCTACCTGGGCTGGGGCACTGACTGGGCGGTTAATGACCCTGGGCCAGGCCAGTACCTCTTAGCTCCTTCCTAACCTCTGAGGTTGATGTCCTTAACCCCCCGGCTCCTCTACCCGCTGCAAGCTCATTCCGTCCCTGGACAGAGCAGGTGGCATAGGGGGCTGTGAGGCCGGGGGTAATTGTGGCTAAGTGACCTAGGCCAGCCTGCCAGGTGGGGGAAGTCTGTCTCCTAAGACAACGGCCTTTCCTTACTGCCTGGGGCCAGATGCCCCCTTCCTGTTCCAGTCTAGGCCTGTGGTTTAGGGCTCTGTGGAACCCCAGCATCTGCCTGGATACCAGCACCGTCACCTCTCACACCCGTCCCCTCACGTGATGATGGTCAGGGAACTGGGAACTCCCATTGCCCAAGCAGGCACGAGGGCATGAATGAGCAGAGGGGAAGGAAGTGGCTGGGATGTGGCTGTCTGGGGTGCCCCACACCTGCCCAGACCTGGGCTGCCAACGCACCAGGGCTGGGCCCAGAGGAGCTGTGCGTTCCTGCTAGGTCAGCCAGGGCCCCCCAGGCTGGGTAGAGGAGGGGTGAGTGTGAGGATGCCCATGGGCCTCTGGCCCTGGGGAGGTAGGGGGACCTTCTCTTGGGGCATAGCCGCCTGGATGCAGTCAGCCGTGTCAGAGCCCTGGGGTCCCTGCCTCACCACTTACCCGAGGCAGCATGACCTTGGACCAGTTGTTCCTCTCTCAGCCTCCATTTACCCATCTGTGCAATGGCTGAATAACAGTCCCCTGTGTGGAAGGGGATGGCTTGAGGGTGGGTCTGTCCTGGGCAGGAGCAGAAGCCAGTTACTAGGGGATTGGAAGCCTGGTGGACTCATCATAATCACGTCCCAGGTCGTGGCTGGCCGGGTTGGGGAAGTGGAGTGCCGGGACAGTGGCTCTCGAGCTGTGATCTCATTCCACCCCAGGCTGTAGGTCTGTGCAGCCGCCAGTCTGTGCCCTATCTGGGAAACAGGTTACACAGGTGCATCCCCTGCACGGTGGCCAGGCAGGCCCTTGACGTCCCCGCGCCCGGCTGCCGGGCGTTGTCTTCACAG
Seq C2 exon
AGCTCCACGCAGGAGATCGGTGAGGAGCTGATCAACGGAGTCATCTACTCCATCTCCCTGCGCAAGGTGCAGCTGCACCACGGAGGCAACAAGGGGCAGCGCTGGCTCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160271:ENST00000372050:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.180 A=NA C2=0.081
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development