HsaINT0136998 @ hg19
Intron Retention
Gene
ENSG00000160271 | RALGDS
Description
ral guanine nucleotide dissociation stimulator [Source:HGNC Symbol;Acc:9842]
Coordinates
chr9:135987429-135996561:-
Coord C1 exon
chr9:135996359-135996561
Coord A exon
chr9:135987540-135996358
Coord C2 exon
chr9:135987429-135987539
Length
8819 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
GCCGGGCGTTGTCTTCACAGAGC
3' ss Score
8.58
Exon sequences
Seq C1 exon
GCCCGCGCTGCGAGCCTTCCATGGTGCAGCGCATGTGGGCCGAGGCGGCCGGGCCTGCTGGCGGCGCCGAGCCGCTGTTTCCGGGCTCCCGGCGGAGCCGCAGCGTGTGGGACGCCGTGCGCCTGGAGGTGGGCGTCCCCGACAGCTGCCCGGTGGTGCTGCACAGCTTCACGCAGCTAGACCCCGACCTGCCGCGCCCGGAG
Seq A exon
GTGGGTGAGCTGGGGCGGTCGGGCGGGGGGTGCGTCGGAGCCTCCCCACCCGCGGCAGAGCTGGGCAGGTCGGGGCGAGCCCCGGACGGGGCCGGGCGATCCCAGCGGGCCGCCTCCCTCCTCTCTCCTCCATAGGTGGGGGTCGGGGCCTTCTGCAGAAATCAGCCAGCAGGGTGGGCAGTGGGGGCTGCCGCCGCGCCCCGTCCAACAGTAGGGACCACGGCTGGGGTTTTGCGCCCCTCAATACCGTTCCAGGGCCTGCTGTCACCAAGGCCGCTGCAGCCCAGGTGGACCTTTTTCTGCGGCACTGTCCCTGTTTACATCGGTGGCCTGTGCCTTATTTCACTCAGTTCCCACCCAGGGCCCGCAGCGCGTCGTTAGCCTTTACGATGCAGGTGTGGAACAAGTGGTCGGGAAGGCCAAATCCTAGAATCCTCAGAGGTGATGAGACCATAGGGGCCTTCCAGACAGACCCTACTTGGGGCAGATGTGGATCTGGTGACCAGGGACATCGGGGCTGCTCAGAGCGGGGTGGGGGGGGGGTCGGGGGATGGGGTGGAGCAGCAGGCCTCCAACACGTGGGACCAGATGTCCTGGTGGTGAGGGGAGGAGGGTGGCCCAGGCCCAGGGCGGGCAAGACTTGTTTCTGCTTAACTGGAAAGAGTGCCAACACCCTGAATCGGTAAGGACTGGGTAGGATTCAGAGAAGGGAGTGGTGTACCTGTGATGGATGGAGGGGAGGGTGACTAGGTGAGGGCGGGGGCTTGTTTCTCGTGTGCCCTGGGTCTCTGGGTGGTGCCATCTGCCTCCCACCTGACTGCTGCTGACTACACAGCAGAGGGAGTGGAATCCAGAGATGCCCCCCTCGCCCTGCTCTGCCTGGGCACAGGGCCTGCACAGAGGCCATTCCTGGATCGGGGGCTCAGGGCCCATCAGAGCTTTGGCTGGGCTGCAGCCTTCACAGTGAACCTCCTGAGTCCCCGTGCGGCATCGTGTTGCCTTGCTGCGTCTCCAGTCGCTTCATGGCTTTAGACTGTGGCGCGTTGTGATTGCTGGCGATTGTTAGCCTGAGTCTCGTGCCTCTTGGTGTCCCGGTACCTAGACAGGGCCTGGATGCGACTTGTTTCTCCGCCCAGTGTTGGGCAGAGCTCTTGGTGGGGGAACACCACACGCCTGAGAGACCCTTTCCTCCTGAGCTTGGCAGATGGCCGGACCAGACGTGTTCCCTCAACCCTCATCTATCCAGGGCTCTGGTCCTCATTGGCGGCTGGAGAGGGACCCCTGGGAGGGTGGGGGTGGGAGGCTGACACCAGCCCAGCGCTCATCTGGCTTTCATTACCTCTGGCAGCAGCTCGGGCTTTGTGTGCTGGGAGGGTCCGGCGGAGCGCTCACAGTGGCCGTGCAGGTTCCCTCTCTCCGTCCCTGAGGAACTGAGGGAGAGGCAGAGCTGAGCCCCACCCCTGCCTGGGGGTCTTGTCTTCCCTCTCTCTGGCCCTGGCGCTCCTTGCCCAGCCTCAGCACTGAGATCCAGACCTCGACTGCTATTTAGAAATCAAAGGGGAAGCTTCTGGCTGGGTCAGGAAAACCAGGATCCTGGCAGGAGAGGAGGCCACTGCCGGAAACTGAACACAATGACCATTTACCAAGGGCCCAAGGGAGGGGGCGGGGAAGTCCCTGTCCCTCCTGCCAACACCCCCCGTCCTGGGGCTGGTTTCCTGGTGTCTATGTGGCCTGCCAGAGCTGACGCTGCGCACTTGGTCCCTGTCCTCTCTGGAAACCACCAGACAGTTTCTGCCTTCCCCCGCATCCCTGTTTCCCTACCTAGCTTCCACCCGGTGCTTCCCTCTGGGCTGCCAGATCTCCTCACATCTGGGCTTCCGCTTATCTTCCCGATTCTAAGCCAAGCCACCAATGACCCAGCTTGGCCTGCACAGTTCTTGCTTTCTGGAGGTGACCTGGTCCGTGCCCCCATCTCTGGACAGGCTGTTGCTTTGGCCAGACAAAAAGTGCAGGTTGTGGGCCACCCCCTCACTTCATCTGCCTTAGACCAACCCTACAGAGTAGGTGCCAACACCACCTTCTAGGAAGCTAGGGGGTCAGAGAAGGGAAGTCTCTGACCTAAACACCCGTGCAGCCAGCAAGGGCCGCAGCCAGGATTTAAGCATGGGCTGTGTTCTCTGTGGCACCTACTGTGTGCAGGAGCCACCAGGAGTCAGAGGAAGCCCAGGCAGCCCAGAAGCCCTGAGGTCAGGTGAGCAGTAGGGAAGCTTATGGCTCAGAGGAAGGCAAAAGTGCTTTGGGCCACAGGACGCTGGGGAGAGCTACCTGGAGGAAGCAAGCCCAGAACTGGACCCCACAGGTTTAAGATAACAGCTAATAAGAGCCAGCAGGTTTTGGGGAGGTCCTTGGCTAAGTAATTTGCATCATCTCCTTTTGGGGTCAAGACTGTTAAGAGCTCACTTGACAGATAAAGTCACTGAGGCAACAGAGGTGAATTAGATTGCACAGAGTGACCAAGCTGGTCAGTGGCAGGGCCAGGATTCTGACCCAAGGCCTGAGGGCAGTTGCAGGTGGGCTGGAGTGAAGAGGGCTTCTCTGTATTCACAGGGAGCATCTCCCTTCAGCCTCCCGCGTCTTCCCACTGTTTGATCTCTTGATCACACTGTGTGCAGGTCTTCGGTTTAATCCCCAGGGCTCATGAGCACTTTGACACTGAAGACCCCAAGGCAAAGGGCCTGTCCCTGTGTGGGTGTGTGTCCCTGCATGCATGTGTACAGACTGTGGTCTTCCAGGAGAGCTTCCTGGGTGACTCTGAAGGGGCAGCCCCCAGGACCCTCAGGTTCCCCTCTTGCTCTACTCGGGAGGGTCCCCCAGAAGAGGGGGACCAGGCTGGCTGGTCCTGGGTCTTTGTTCCTTCTCCAGGCGGGGGATGCTCAGGCATGCTGGCCTGTTTCCCGGGAGGCTCAGGAATGGCCCTGGGAGATATCAAGCTGCTCGTTGCCAGAGCTGGGGTCTGATTCTTAACCTGGAAATTGGGCATTTCCAGGACCTGTCTGCGTTGCCAATGAGAAAAGAGTGGGGAGATTTATCACTGGCCCTCTGCAGGCAGGCTCTGAACGAGCCAGTGGAGCGGTTTCAGGAAGCTGCACCCAGGCAGTCAAGGACTGGTTCCCAAGAGCTGCTGGTTGGCCGCCCAGATGGCTCCCATGGCGTGGTGCCACCATGCTGTGGCCACCCAGTCCCAGGGTTGGACTTCCAGCCTTGCAGGCCCAGAATCACTGTGTTCCCAGATATACAGCAACAGCAGAGCAGTGTTCCCCATTTGATTGTTAAGGGGCAGACACTGATGCATGCAGCCTCATGCAGGACAAGCTGAGCTTTGAGCAGACCCAATTCTCCCAGTTCCGCACACCTTGGCTGCCCACGGGCGGGGGAGGCAGTGGGATGGCAGCCCAACAGTGGCTTGGCGGGCGGGGCAGGACACCTGCGTTGGAGGGTTTTGGCGTTTTCCTCCATGGGGAAGCTTGCATGCTTTGGCAGCCTCCCCTGTAGTCATTCCTGGAGACTTTTGTCCATCTCAACCGAGGGGCAGGGAGCCTGGGCTCTGGAGAGAAGAGAGCTATGCTGGGATGCCAGCTCAGCCCCCTAGCAGATGTAGACGTGCTCCTGAGCCTCAGTTTCCTCATCTGTAAAATGGACATGATGCCAGCTCTCCTGTTAGGGTTCTGGTGAGGACCCTCGAGTTAGACAAGAGACCTGAGGAGCAGCCTGCACAGCACTTGGCACAGTGGACAGGTAGCAGCTGCCACAATGAGGTTTTCTGATTAGGTGCCAGGGGAGCGGCCTGACCCTTCCAAGTGCCCTGGGCTCCTCGGGTGCGTCACCTGGCACCTTCAGCATGGCACTTCCCTGGCCTGGTGTCTTGTAGGCCTTTTGCCCAGGGCACGTCCACAAACCTCTCGGAGATGCAGGTGCTAGAAAGCTGGCCCTGCCACCCTCCCCTGCGAATTTGCTGTGTGACCTGAGGAAATCCTTCCTGTCTCTGGCCCCTCCTCCACATCTGTGCCACAAGGGGCTGGACTCTGCTCCAAGCCTGAGACCATGGCAGAGGCAGCGCCAGGCCTGGGTGGGTCCCAACAGGCCAGGGTTCAAATCCCTGTTCTGGCTGCCACGTCCTGGCTCCTGACCTGGGCGAGTTCCTCTCAGGCTGTTTCCTTGTCCATCAGGCAGGGCGTTAGGAGGATTAAACGTGATGGGTGTCCAAAGGGCCTTGCACCCAGGAAGTGCCCGCATGTGCTGGGCACTGTAGCTGGTTAAAGTTGGGGCTGCCCTGCACCCCCTTGGGACCAGCCCACCTTCCTCCTCAGCTGCCACCAGCCACGCCCCTCCCGGGCCTGGCCCTGTGTTCACCTGACTGTCAGGGGCTGGGCGTGGACAGGGACCCTGGATGCCCAAGGCTTGCGGCTGACCTGGAGGTCTGGTTCTCCCTCCTCCTGCTTGAGGCACGATTTTCCCATCAGTGAGTAGCAGGGCACAGGCCGGCAGGGAGGGTTTCTGGAGAGATGGGCCGGCCTTTGCGGGGCTCAGCACTGGTTGGTTCCCAGCCTCCACTTTCTGAGGCCAGGGAGCATCCTGGTGGGCAGGCACCGCGTGTCGTCCCGGTCTGAGGCCGCCTCTGTGGGCTGCCATGCCCAGGATCAGGAGTGTGGCCCACCCACACCCCGGGCTGGCCTCCTGTCATCTTGATGCTTTGTCTGTGCGCTGGGGATCAGGGTTGGGTCCACCCACCTGGAGCTGGAGGGCAGGCCCGAGGGCAGGAGGGTCACGGACACGGACACGAGGCCCTTGCGTTCCACCTCCCTTGATGGGGCTCATGGTCCGAGCTCATGACTTGAGAAGTCCTGGGCTCTCACCTCTGGCTCAGCCAGCACACGCCCCACCGGCTCCTGTCCTCGGGCATGGGTCCCCACCTCTGTAGGACGGAGAAGGGCACAGCAGCGTGGGCCCCGCACTGTCGCAGGAGCCTGGGCTCTGTAGAGAGCGAGCAGCCTTCTGTGATGCGTTTTACGTTTGGCTTCTGTATTGGAGCGGAAAGCTGAAGTCAGAAAGCTGCTCCCACCCACTGGGTTTCAGGGTGACTCAGCCTCTCTTTACAGTGTCCCTCGGCTAGGTCCCTGAGCCTTAGGCAGGCCTCAGACAAGTTTCCCTCAGGTTTTTACAGCCCAGCATCCGTCGCCGGCCCCAGGGGGATATGATGTCAGGTGTTGTCCGGTACCACGCCATCAGGTCCCAGTGCCGGTCACCGAGCTGTGTGCATTCTCTCTTGACCCCCACTGTTGCCTGTGACAGGTAGTGCTGCCCTCCCCAGATGACACACCAAGGCCGAGGGCCAGGGGCTGGGCAGAGCCAGCGAGAGACAGGGAGCTGCTGTCTGGTGGGCCAGAACTGTGAGGTGCTGGCAGGGGGGTGGCAAGCACCCCGGGGTGACCTCTGGTGACTGGGACCTGAGCAGCAGCTCAGAGGGGCTTGGGAGGTCCCCCAGGACAATCTCACGCACACGGAGGCTCTGCCGTGAGCCTTTCCACACACAGGCCCGGGGAGGACCAGGGGCGGAGCAGGCCGAGGTGCAGGCTAGAGCCCTCTCCTCACTCCGCTTCAGCCCTCAGCCAGGTCTCCTTGGGAGGGGCCGGTGAGTTCCTGGAGCCATCCATGGGGCAGGGGGCCACTAGCTACGGTTTCCAAGGAAAGGCGTCTGAGTCCGGAGCTGCACCAGAAGGCTGATGCTGGGAGGAGGTGCCGTTGGCCTGAGCGGGGAGATGGCAGGGCTGGGGCAGGCCCCGTAGGGTTCCTCAAGACCCTCACTATTCTACCCAGAGGGAGTCTGGGTTTGGCCTGTGGCTTCCTCCTTCTGTCAGCCAGGGACACGGCATCCTGCTGGCCTGTCACTCTGAGAAGGCTGATCAGGTGACACACTCACCAGACACCACCAGGCCCTGTTTCCCATCCTCATCTTCAGGGCTCTGGGCTGTGTCCCTGGAGACATTGGGGTGTGGGGGCCCCTGCTCACCGGGGACCCCATGCCACCCTCACTGCACTGACCCAAATGTTAGAAGGCCAGACAGTGTGTTTACAGGCACAGCTGCCGACTGGGTCCCAGAGCCCAGGGACATCAGCATGCCTGCTAGGGGTGGGACAGGAGTGTCCCTTGAGGACACAGCCAAGCACGTGGTGTTCTTTTCTCCTCCTAGCAGTCAGCTCATAGCGGCTGCCTGGGCACCTGCCCTCAGGGGAAAGCGTTTTCTCTGCATCAGCTGTTCACTAGGCCGTTCCTGCTCCTCCCGCTCTGAGCTCCCAGCCCGGCCAGAGTGCCCTGGGGCCCAGGCGCTGCCCAGATGGGCTGTCTGCTAACAGAGTGACCTAGGGTGGCCTGTGGGTGCTGGAACCCTGCCTTTCTTGCTGCAGAGGGTTCTGGGGCAGCTGCCAGGGCTGTTGGCTGCTTTCTTTCTCTGTCCTGTGAGGGGGCAAGGGATAGAGGCCTTACTCTGCCACTTTGTTCCCAGACCCCAGGGCAGCTCTCTCTGGAGCCTGCACCTCCACCATCTGAGCAGATGGTTTAAACAGCCCCTGTACTCCACGTAGCTCTATGGTCTGGTTCCATGCCTGCTGCTGCTGTGACGGGAAGCGACCAGAGAAGACAGGCCAGCTCCACGCGGGCTAGAGCGTCTCCCCGACTGTGTGACAGGGTGGCAACTCCCTTACCCCAAGCATGCATGGCTCTCAGTGTTGGGCCTGCATCCTTCCCCACCACCCGGCTGGCAGAAGAGGGCCCCCCGGGGGTGGGGGAAGGGTGCAGGGATCACATGACACCAAGCAGGGCTGGGCCAGCTGCTGGCCTGCCAGCTCACGGAGGAGCCGCTCTCTAGACCTGCTCAGGGACAGCCGAGGCCACCTGGCTTCAGCCCCTCCTGGGGATTGGCCTGCCTGGGGACACCTCTGTCCAGCAGGCACTGATGGTGCTCAGCCAGGACCTGGGTGCTGTGCTGGGCTCCCCCAGGGTTAATGTTTAGTCCCCTGTGGCGGGCTTGTCCTGCACGAGATCTCAGAGCCACTGCCGGTGACTTGGACACTCAGGATACTGTCTGCCTCCCAGCTGGTCCAGATGTGGCTAAAATCCCTGGGAGAGAGAGAGACTCCCAGCTGAGCCAACGGCCTTCACAGGAGGCAGTCTGGGACCCCTGAGGAGGCCCGGGTGGTTGGGGGCCCTGGTCGCTGTAACCTCTAATGCTTTTCTTTTCAAAGGAACAACTTTCTAGGCAGGGGAGAGATGTGTGAGTCAGGAAAAGGGGGGTGAGCGTATGTCTCTTTTCCTGTCAGTGGAAGGGCCAGACCTCCCCTGGCGGGGCTGTTTGTGGGGTGTGGGTGTGAGTGTGCCTGTGGGTTCCCTGCTAACTTCCAAGAAATGGGGCTGGCTCTCTGTCCAGAGGCGGTGGCGGTCAGGAGCCCGGCACAATGCCCGCAGCTTTCCTGTTGTACAAAGCCCAGCGTGGGAGGCGACCTCAGGTCGGAGGAAGTGGACTTCCAGGATGGCTCCTGGGCCTCTGAGGGTGCGCAGGAGGCAGGAGGCCAGGGTCCCGTCCACAGCATGCTGGACAGTCTACCTGGCTCCTGCTGGGGTTGAGGGAAGGGCCTGAGTCAGCACTGTCTGCCAGGCCTTCTCTGAGCTCCACGCCTACCTGGGCTGGGGCACTGACTGGGCGGTTAATGACCCTGGGCCAGGCCAGTACCTCTTAGCTCCTTCCTAACCTCTGAGGTTGATGTCCTTAACCCCCCGGCTCCTCTACCCGCTGCAAGCTCATTCCGTCCCTGGACAGAGCAGGTGGCATAGGGGGCTGTGAGGCCGGGGGTAATTGTGGCTAAGTGACCTAGGCCAGCCTGCCAGGTGGGGGAAGTCTGTCTCCTAAGACAACGGCCTTTCCTTACTGCCTGGGGCCAGATGCCCCCTTCCTGTTCCAGTCTAGGCCTGTGGTTTAGGGCTCTGTGGAACCCCAGCATCTGCCTGGATACCAGCACCGTCACCTCTCACACCCGTCCCCTCACGTGATGATGGTCAGGGAACTGGGAACTCCCATTGCCCAAGCAGGCACGAGGGCATGAATGAGCAGAGGGGAAGGAAGTGGCTGGGATGTGGCTGTCTGGGGTGCCCCACACCTGCCCAGACCTGGGCTGCCAACGCACCAGGGCTGGGCCCAGAGGAGCTGTGCGTTCCTGCTAGGTCAGCCAGGGCCCCCCAGGCTGGGTAGAGGAGGGGTGAGTGTGAGGATGCCCATGGGCCTCTGGCCCTGGGGAGGTAGGGGGACCTTCTCTTGGGGCATAGCCGCCTGGATGCAGTCAGCCGTGTCAGAGCCCTGGGGTCCCTGCCTCACCACTTACCCGAGGCAGCATGACCTTGGACCAGTTGTTCCTCTCTCAGCCTCCATTTACCCATCTGTGCAATGGCTGAATAACAGTCCCCTGTGTGGAAGGGGATGGCTTGAGGGTGGGTCTGTCCTGGGCAGGAGCAGAAGCCAGTTACTAGGGGATTGGAAGCCTGGTGGACTCATCATAATCACGTCCCAGGTCGTGGCTGGCCGGGTTGGGGAAGTGGAGTGCCGGGACAGTGGCTCTCGAGCTGTGATCTCATTCCACCCCAGGCTGTAGGTCTGTGCAGCCGCCAGTCTGTGCCCTATCTGGGAAACAGGTTACACAGGTGCATCCCCTGCACGGTGGCCAGGCAGGCCCTTGACGTCCCCGCGCCCGGCTGCCGGGCGTTGTCTTCACAG
Seq C2 exon
AGCTCCACGCAGGAGATCGGTGAGGAGCTGATCAACGGAGTCATCTACTCCATCTCCCTGCGCAAGGTGCAGCTGCACCACGGAGGCAACAAGGGGCAGCGCTGGCTCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160271-RALGDS:NM_006266:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.180 A=NA C2=0.088
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)