RnoINT0130929 @ rn6
Intron Retention
Gene
ENSRNOG00000009812 | Sbf2
Description
SET binding factor 2 [Source:RGD Symbol;Acc:1588657]
Coordinates
chr1:174993623-174997001:-
Coord C1 exon
chr1:174996803-174997001
Coord A exon
chr1:174993820-174996802
Coord C2 exon
chr1:174993623-174993819
Length
2983 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TCCCTCTGCCATTCCTGAAGCTA
3' ss Score
5.51
Exon sequences
Seq C1 exon
TTTCAGATGATTGTGAACTCCCCACAAGTACAACTCTGAAGGCCTCAGAGAAATCTACAATGGAACAGTTGGTGGAAAAGGCATGTTTCAGAGATTATCAGCGGTTAGGTTTGGGAACCATAAGTGGCAGCTCCTCCCGTTCAAAACCAGAGTATTTCCGAGTCACTGCCTCCAACAGGCTATATTCGCTGTGCCGGAG
Seq A exon
GTAAGTGTCAGGGGGCTTCAGAAAGAGACCTTTCTTTATTTCCTGTTGGAACCTTTAAAGTATTCCAGAAACATGATTCTGGAGATGCGTAAATGTCAAGTTAAGAGTTAGGTTTGTGCAATAGGAGATGGCACCCTCTTGTCATTCTCAGAACAAGTAGACCTCTGCTACAGCAGGGGACACTGTCTGCCCTCTCTCTGCATCTCCTTATTCACCTTTCATTGTGTAGTTTGTCCCAGACAGATGGAAGATAAACTTTTTAAAACAATAAGCACTGTCCAGAGAGAGAAATCAATTAAGATAGTCTTGAAGTAGCACAAGCAGACTACTGAGAAGAAGAAGAAATAGTGCAGAGCCTAGCATGTGGACATTTGATTTTAGAGAAAAGCATTGGATGAAAGTTTTGTTTTGTTTTTTAATAAATAGTCCTGGAGATACATATATATGAGGAAAATTAATCTTGACCCCTAGTTTATACATCAAAACTGCAATTCCCATTGATTTATAGACTTACATAGAAAATGTTTTTAAAATAAAACTTCTCTAAAATTAGAGAATGGCTAGGTGGTAGACATACACTTTTAATATCAGGAGGCATGGGCAGGCAGATCTCTTGAGTTTGAGACCAGCCTGGTCTACAGAATAAGTACTAGAAGAGCCAGGCCACCCAAAGAAATCCTGTCTTGAAAATACCAATTTTTTTTTTCAAGATCTTGAGATAGAGGATTTCTTGAGACAGAAATCCCACAATGTAAACAATAAATTATAGCACCTCTACATTAGGGCTAGCAGTAAAAGAGCAGAAAAGAACCAGAGGCACTGTTCACACCTACAATGACAGCACTCTAGATGCTGAAACAAGACAATCTCTAAAATTCAGGGACTACATGGGCTACAGTGAAAATATGTCAAAAAAAAAAAAGAAAAAAGGAGGAATAAGGTGAAGTTAAAATGATAGCAAGAGATTTTAATAATCATAAGAAAATGATTAGATAGGAAAAAATTAAACACAAAAATCATCCATAATTTCTACATCCTTTTTGGTCCCAAGTAACTGCAGGGTGTTTCTCCACACCCCTGCCCACTTTACTCCTGAATAGAGACAGGCACATAGGCCTTAGATTTTCATTCACGAGCTGCAAGCACTGATAGCTGGGCAGACTGAGCTGTTCTAACCCAACGAGGCTTCTGCTACCCAGTTAAATGTCCTGTTACTCGCCATCTGCTCTTGCCCTGGTTCTTTCCAGTCCGTGTGTGTCTTCATGGCCACTTTTTCATTGACCTTTCATGGTGGGGTCTCCTTGTTGGGGTCTGGAAGTCATCTCACAAGCCACTCAAACACCAATCTCAATCTAATAGGAATGTTTTATTGAATGCCAAAGACTGATGGCCACAGGACAGATTTAGGAGCTGACTGTGACATTAAGTTAAAATCCTACAGGGCATTTTAAGCCTGAGATTATAAACAACTGTGCCACATTATTCCACCAATCAGGATTTAGGAATGAGGGATTTCCTTAGGAACATGTCTTTGTTCAGCTGTGGCAGGGGACTTGTCTAACTTTCATGTCTTGACTTGCCAACCAGAATGTCAGTTACACATACACATGGCTCTTTCTGCCAAGTGGGATGTCAATTCCCAGGGAGTTCTTGGGAACTTAGACTTTGCTCCACCCCTACTCAAATGGAAATCTTTACTGTAAATAGATGTAGGTGTCTCTCTTTTGTTGGGACCCATCCAGGAGCAGCTTATAAAGCCGAATTCCATAAAAGCTCATTCACAGGTGCAGAAAGTGCTTCTGGGTGGTTAGTTCGGGTTCAAAGCTTATTGTGGCTAACTGTAACAAAGCAGTTCTACTGACTTCTGTAGTGACTGGTTTCTAAGGGCACAGAACATAGCAGAATATGCAATCAATTTGGCCATGAAAAAGTTTCCTAGTAACAGCAGAAACAACATATGAGAGAGTCCTTATAATATTAGTAACAGCACAAAATGGCAGGCTAGCCAGGTAACAGTTTCCTAGGCCATAACATTTTACCTAGGCTTTAACATTCCATCTAGGCCTTAACACTCCTGGTCTCTCCATGTGGTTTCTCCACCCTTCTTCTCCTAGTGTTCTTCTCTACATCTAGGCTCCTTTGAGACCCCTGACTGGGATCAGAAGTCTCACCCTATCATTCCTGCCCAGCTGTAGGCTGATCAGCTCTTTATTACCAAGCAGAGATTATGAAAAATAATATTTACATGACATAGAGACCAGAGATGCTTGACCATGCCAGTGTCTGGGCTACAACCAGTTGTCTGAATACACAGTACACAAAACCATCCCCCAGGAATTCAATAAATGAGCAAATTTTTGGACAGACTGATCCCAAAAGAAGAACTATAAGTGTCTAGTAAATATATGAAAAAATGTTAATCCTTAGTCCTTAGAAAAATGTAAATCAGTGCACTAAGATCCTACTTCTGCCTCTAGTCACAATGATATATTTTGGCAAGACAATAAGTAGCAAGAAGTGGTGGGGATTATGGGATGGAACCTTTTATTCTGCTGTTGAGAATGTAAGCCAATGTGATCACTATGGAAATCAGAATGGAGGTTCCTCAAAATACTAAAGTAGAATTTCCATCTGATCTAGCTGTACATGAGAGTAAACCTGAGGGAATCTAAGTCAGCCTACCACAGACATACTCACATGTCTATGATTATTGCAGCACTGTTTACAATACCAAAATGTGGAGCCAGCCTAGATGCCCATTACATATGAATAAAGAGAATGTGCTATATACACAGTGGAATTTTATTCAGCTACAAAAAAAGAAAGAATTTAAATGAACTTCCAAAATTTATGATATATCTCAACCTGTATGTTTAAAAATCACAGTGATGTTATGCCATTTACTCTTTTACATTATCTCTCTCCCCATGTTTCTTACTCTTCTCCTCCCCAATCACTCTTATTCCCTCTGCCATTCCTGAAG
Seq C2 exon
CTATCCTGGCCTTTTAGTCATACCTCAAGCTGTACAAGACAGTAGTTTACCAAGAGTAGCCCGCTGCTATCGGCACAATCGCCTGCCCGTCGTATGTTGGAAGAATTCAAGAAGTGGTACTCTGCTCCTCCGATCTGGAGGATTCCATGGGAAGGGAGTTGTTGGTCTGTTCAAATCACAGAACTCCCCTCAAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009812:ENSRNOT00000013126:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=PU(13.3=91.0)
A:
NA
C2:
PF066029=Myotub-related=FE(14.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]