RnoINT0131111 @ rn6
Intron Retention
Gene
ENSRNOG00000025278 | Scai
Description
suppressor of cancer cell invasion [Source:RGD Symbol;Acc:1594720]
Coordinates
chr3:23388422-23391721:-
Coord C1 exon
chr3:23391569-23391721
Coord A exon
chr3:23388524-23391568
Coord C2 exon
chr3:23388422-23388523
Length
3045 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
CAGGTACGTTTTTCTTTCAGGTC
3' ss Score
10.06
Exon sequences
Seq C1 exon
GCAGACCCTGTAATGGTGTTAAATGATGATAATACCATTGTTATCACATCCAATCGCCTTGCTGAGACAGGAGCCCCCTTGCTGGAGCAAGGCATGATAGTGGGACAGTTGTCTCTGGCTGATGCACTCATTATTGGTAATTGTAACAATCAG
Seq A exon
GTAAAAAACTGTGAAAGATTTATGCTTAAAATTTACTTTTAAAAAGTTTGTTTTGGTGATCCATGGATTTTTTTTCCCCCTTGTAGAATTCCTTACATCTGTAAGGAATAGTCAAATCAATTATGCCATGTTTGTTCATATGCATATTCATATATATATGAAAGTATATTTGTTTAGAAACAATTTTTAGTGACATAGAAAGATGCTTACTAGTGTATTAATTTGCCGCTGAGCTAAATCTACATCCCCAGTCCAATCAGTATTCATGAATTATCAGTCATGTCTCCAGGGTGCGTGTGTGTGTTTGTGGAGGGTAGAAAAAAACAAAATGCCTTCACTAATGGAGTTTTCTGTTTACCTACAAAAAACAATTATTAACAAAATAACTACTTAGATAGTATCACTTCAAAAACTGTAGCAAAACAGGGGCATATTTTTCTGATGTTTGGCATCAAAGGATTTGAGTTAATCTGAGATCTGATAAGATGTTTTTCTGAGAAAGTGCTGTGGTTAAGAACTGCAGTAGAATCCAGGCAGTGGTGGTGCACACCTCTAATCCCACTACTCAGGAGACAGAGGCAGGTGGATCTCTGTGAGTTTGAGGCCAACCCTGTCTACAGAGCAAGTCCCAGGATAGCCAGGACTATACAGGAAACTCTGTCTTGGAAAACAACAATAACAAAAACTAAAGTAGGAAGTTGTCCAGAGTAAGCATGCCAAGCAAAAGTCACGATTGTACTGTTGTCAGCAGGCCTGGCTACCGGGAGGATGAAGCCCTGTAGAACACTACACTAGGGGATGGAGGAACAAGAAGCACAAGAAAAAGTCAGGAAGGTGATCTTTTCCCAAGTGCACAGGAAACTAGCCAAGGGCAGGGCAAAGAGTGGAGTTGGTGAGGGCTGCATTTTGAGAAGGTCATTTTTTTATAATTTCTTTAAATTATTTTTTATTTTTTAGCTGTCATCCAAAGAAATAGGTTTCATTATGATACTTGCATATATACATATGCAGTATCTCACTGTGTAGTTCTGCCTGTCCTGAATCTCACTATGTAAACCAGGCTAGCCTTGAACTCACTGAGATCTGCCTACGTCTGCCTCCCAAGTGTTGCCACCACACTCAGCAATACCCTGTTTTTAAAAGCAAAACAACTAAAACTAGCAAACTCAAAAACAGGAACATAACAATCTCCGATTCCAGTGTCTTTGAGCTTATTCCTTAGAATTCAAAAGAACCAGGCGTGGTGGCACATGCCTATAATCACAGCCCTTAGAAGGCAGAAATAGGTGTTAAAACCATCCTGGGCTACACATAAGACCCTTTCCAAACAAACAGGAAGAAGAATGCATGAAACTACTACATTGGTTCTGTCCTAGGTCACGTGCTTTCAGTTACCTCCGCTTTGACAAATATTATCTCCTTTGCTCTGATCTAGAACTTGTTTCCTTCTCGCGTGTGTGGATAATGGGTGGTGACTATCTGGGGCTGTGGTGCAATTTTATAACACTTCTGGAAATTCAGTGCTGTGTCAAAACATTAAATATGTTCAGAAATGCCTGTATTGATGATTTGTTCTATACATCTTTTTAAATTTTTTTTTCTGTAAAATTCTTACATGAGGAAAATGTGAGTTTTGCTGATCTGCTAAGAGAAATACTAAATGGAATTATGGTGTCTCAATGGTAGAGCACTTGCCTAGCATGCATGAGGCCCGGGGCCTGATCTCTAGCAATGTATTATGTATGTATGAGTGAGGTACATTTTCATTTTGATTTTTGAGACAGGGTCTTTATGTAGCCCTAGCCATCCTGCATCTCTCTTTGTAGACCAGGCTAACCTCAAATTCAAAGAGATCTATCTGCCTTTGCCTCCCAAGTGTTGGGATTAAAGAGGTAAGCCACCATGCCCAGTCTAAGGTACAGTTTTGAAACTTCAGGCAATAATCTTTCAAACAACTCTCCTAACTAAAAGCATTTCTACTTTATTTTATAAACCTCTTCTTTATTCTGTCATTACATGTGCCTAGGTCTTCTGTAAAACTATTATTGAAAATAGAGAAGGATGCACTTTTTTTTTTTTTTTTCCGGAGCTGGGGACTGAACCTAGGGCCTTGCACTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCAGAAGGATGCACTCTTAAATACTGTGTAGTGCCAGAACACTGAGGAGATTATAAAGTGTGAATCCAGACATAGCTCAGCTTAAGCAAATGTTGCCATGATTTGTAGGGCTGTGCTTTTGTAACTTTTGTTGCTTTTTTAAAACTATTTGGGGTAATTAATGCATTATGATGGAGAAACCTAAGCACTGTTAACTGTACAAAGTAGAGATTAAGAATAGGAGTGTCATTGCATAATTTTTTGCCACATTTGCCTTTTGAAAGTCTTGTGATTAAATACTAAAGAGTAAAATATGAGCTGTCTCTGGGCATGGTGGCTCAGGAGGCCTTTAATCCCAGCACTTGGAAAGCAGAGCTAAGAAGCTCTCTTGAGTCAAGGTCATTGTAGTCTATATAGCAATTCTAGGTCAGCTAAAGATACATGATAAGAGCCTGTCTCAAACAAACAAAGAAAACCAACCCACCCATAGACAAAGAACTATAGGCAAACTAAGGAAGGCTGACAGTGGGAGAAGTCTTCCTTGAGGTTGTGCCCCCTAGTTGGTTATCCAATACAAAGGGGTCAGCGGTGAAGTCATAGACATATAAGCAACACTAAATGGACTGCGCAGGTTGTATTTTTATATTTAGGTGCATACGTACACACACATCCCAATAACAGTTAAAGAAAAAGAGGGCATGATTTCAAGATGGATCAAGAACGTGGGAAGGATTAGAGGGAAGAGAGAAGGGGAAAGATGTAACTTCTTTTTTAAAAATGAATGTATGTATGAATGTATATTTTAAAATCATCTGTTATTAAATATACCTAAAAGTCAAGAGTAATAATGTGATCAAAGATCAGAAGTTCTACTTATTCCATAAATGACCAGGTACGTTTTTCTTTCAG
Seq C2 exon
GTCAAATTCAGCGAATTAACTGTTGACATGTTCCGGATGTTACAAGCCTTGGAAAGGGAGCCAATGAATTTAGCTTCCCAGATGAATAAGCCGGGAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025278:ENSRNOT00000039410:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.324
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(10.1=100)
A:
NA
C2:
PF120703=DUF3550=FE(6.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]