RnoINT0131860 @ rn6
Intron Retention
Gene
ENSRNOG00000010214 | Scrn2
Description
secernin 2 [Source:RGD Symbol;Acc:1307741]
Coordinates
chr10:84967481-84968284:+
Coord C1 exon
chr10:84967481-84967654
Coord A exon
chr10:84967655-84968102
Coord C2 exon
chr10:84968103-84968284
Length
448 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
TCTCCCTTCTTTACCTCCAGTGC
3' ss Score
10.89
Exon sequences
Seq C1 exon
ATGGCATCATCGAGCCCCGACGCCCCTTGTTCCTGCGACTGCTTTGTCTCTGTGCCCCCGGCTTCAGCCATCCCAGCTGTAATCTTTGCAAAGAACTCAGACCGGCCCCGAGATGAAGTCCAGGAGGTGGTGTTTATACCAGCAGGCACTCACACCCCTGGGAGCCGACTTCAG
Seq A exon
GTGGGTTAGGGTTAGGACTTAGAAGGAGTTGGAGGGTTTTGACATTAGTCGTTTTGTAGTGGAAAGAGTATGGACTTTTTTTTTTTTTTTTTTTTTTAAGATTTATTTATTATGTATACAGCGTTGCACCTGAAGAGGGCACCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCATGACCTCTGGGTGTCATTAAGACAGTGCTCTGAACCTCTGAGCCATCTCTCCAGCCCCGAGTATGGACTTCGAGTCCACCAACTTGGACCCTTGAGTCGAAGTTAGTCTCTGCTAATTCAGTTTACTCATGTGTGACCTGAAAATAGGACCTTTCTCAGGGCCATTAAAGTGTCCTGGCAACGTAAGTTCTGGGTCTTTTTTTTTTTTTTTTTTTTCAGCGAATTCTTCCTCTCCCTTCTTTACCTCCAG
Seq C2 exon
TGCACCTACATCGAGGTGGAACAGGTGTGGAAGACGCATGCTGTCATTCTGAGCCGCCCTTCTTGGCTGTGGGGGGCTGAGATGGGTGCCAATGAGCTTGGTGTCTGCATAGGCAACGAAGCGGTGTGGACCAAAGAACCCGTAGGGGAGGGGGAAGCCCTGCTGGGTATGGATCTACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010214:ENSRNOT00000013580:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0357710=Peptidase_C69=PU(19.0=59.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCATCATCGAGCCCCG
R:
TGAGTAGATCCATACCCAGCAGG
Band lengths:
355-803
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]