RnoINT0131870 @ rn6
Intron Retention
Gene
ENSRNOG00000018657 | Scrn3
Description
secernin 3 [Source:RGD Symbol;Acc:1305064]
Coordinates
chr3:60032562-60041171:+
Coord C1 exon
chr3:60032562-60032771
Coord A exon
chr3:60032772-60040914
Coord C2 exon
chr3:60040915-60041171
Length
8143 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TTTTCAAATGATTTCCCCAGGAA
3' ss Score
7.58
Exon sequences
Seq C1 exon
GAGTTCGTAATATTTCCAATCAGTTTTCCATAACAACCAAGATTGACCGGGAGCATCCAGACATGAGGAACTATGCTAAGCAGAGGGGCTGGTGGGATGGCAAAGAGGAGTTCGATTTTGCTGCAGCGTATTCTTACACTGACACGGCCACAATGATGACTTCACCAAGCAGATACTGCCAGGGCCACAAGCTTCTGAATAAACACAAAG
Seq A exon
GTAAGTTTTAGCATTTAAATAACATTTAAACATTGAATTTTGTGCAGCTATAATGTGGAAATGATCTCATACCTAGTAAAGATATGGTTTAAATAAAGCAAAGTGTTAGGATAGTACAAGCTATTTTTTGATATGTGTAAAGTATTAAACCATTGTAGGAAAATACCGATTCCTTTTGAGAGTCAAGTTCCTATTCTCAATCCTCAAGAAACTTTCTATTTTTTAAAAATTTGAATTAGATGAATGAATACATACATACATACATACATACATACATACATACATACATACATACAAATTTGAACTAGACTTACTATATATATAGCCCTGACTGGCCTAGTATTCACCGCGTGGACCAGGCTGGCCTTGAACTCATAAAGATCTGCCTGCCTCTGTTTCCCTAGTGCTGGGACTAAAGGCATACACTACCACACCTAGCTAAACTGTTACTTCTCTAATTACCTTTTAACAGTAGTATTTTTATTTGTATGTTTTATCCTTTTCGTTTGTGTGTGTCTTTGTATATGCACACATCCATGTTTAGGTGGCATGATTGTGTATTTGGAGGCCTGAGGTTTGATGTTTAATATCTTCCTTAGTTGCTCTCCCCCTGAGTTTTGAGTCAGTCTCTCACTGTACCTGGAGCTTACTGTTTCAGTGAGGGAAGCTGGCCAGCAAGCTCCTGAGACCCTGTGTCTGCACCCCAGCACTGGGTTTAAAGCTGTGAGCTCCCACCTCTGGCTTTTATTTGAGTTTGGGGATCCAAACTCAAAGCTCACAGCAAGTGCTCTCCCAGTGAACCATTTCCCAAGCCCATGTTTCTATTGCTATGAAGAGACACCATGATCAAGGCAACCCTTATAAAAGAGGGCATTTATTTATTTATTTGCCTACAGTTGCAGAGGGTCAGCCCATTATCATCATGGTGAGAGCATAACAGCATGCAGCCAGGCATGGTGCTGGAGAAGTAGTTGAGAGCTTCATTGTAATCCCCAGGTAGCAAGCAGAGAAAGACAAACAGAAACAGAGACAGAGAGAGGGGTAGAGAAAGAGAGAGAAAAGAGACAGAGAGACAGACACACCTTGGGAACCTGAAAGCCCACTCCCATTGCCACATCTCCTCCAACAAGGTCACACTTGATCCTTTCCGAAGAGGATTGTCATAGGCCACCCCTGTGGAAAGGTTGGTTGACTCCCACAGAGCTCTCCAGCCACAGGTTAAGAACCACCGGTCTAGGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAACCACCGGTCTAGCTGAATCAGTCTCTAAACATGGGGTGCAGAACAAGACAGGAAGATACTTGATGTTGACCTCTGACCTCCATCTGTGTGCACACGTGTACTGATGCTTCTGCACAGGCACCCGCCCTCACAGAGTTGGAGATCGGCAGTACGTAATTAATACATAATAGTGTGAGGACTCACCATTTGGGAGGCACAAACGAGTTCAGTATCGGTCTGGGCTGTGTAGGAAGACTGTCTCAGAAAACACGATAGAAGCAAAACCATAATCCCAAGGTGGAGGATAACCAGACAGAAGGAAGACAACCACATAGAATGGTATAAATTAATAAGCTATTACATTGAAATAATTGTCCTATTTAACTGTAAGATAACCAGATGGCAGGCCTGAAATGCATGCCTGAATATAGTAGTGGGCGCATGAGACACAGACTTCATTTTTTTCAAGTGTGATGTACGGTTCATCCAGTGTTCAATGCTTTGCCGAAAGAATAAGTGTCTTTCCGATAGTTCCCATATGAAATTGTCTGCTGGCGTATTATGCTTAAATTTTTTTCTCTAGATAAGGAGCCTACTTCCTTTCTTTCCATCTGTCCCTAGCTGATGGCTATTAAGTGTGCTGCATATATCAAATTGTGTCTATGTGCGTGCGTGCATTCTGAGTAACCAGTTTAAATTGCTGTGAAATTGCACCCTGTGTTTTACATTTACTTTGCTGAACTTGCCACTGCGGTCCTGGTACTTATTCAATGCTTGCTAGTGGATTACTTACAGCTGTCCTACTCAAGTGATCATGTAAATCCTCCTTTCATTCTGAGAATTGTAGGTTTCCAATCCTGAAAACATTCTTATAATACTTGTATTATCACGGTGTTATAGTTCTGACATTGTTTTTTATTAAAACTTGCCATTTATAGGAATTTAGACCTGAATCGTTTTAAATCTCACTAGATGTTGAAGCTTTGTGCCTGATAGGTAGGTGTGAATGGTAGGGTTTTGCTTTATTGTTGAGTTTAATATCAGGGGCTCAGTGTAGATGTAGCCCTCTATTCTCCTCAGTATTATTCGAGATTTACTGAAAGATAAGCTCCTCCAACAAGTTATCTGTAAATTCAGCAAAGTATTTTTTGACTTTGAATTATGCGACACCATGAAGGAACTATGTAAGAGAATATATATGTGTGTGTGTATATATATATATATACATATATGTATATATATGTATATATATATATATACACATACATACATACATGCATACATATATACACACATATATATCAAATCTGTTGCCATTAATATTGGTAGCTTGTATCTTTAACAGCAGCACTCTAGATTCTTTCCATATGAAAGTTAAATTCCTTTTTCATTGAAGCATCAAAAGATCATAATTTGGGTACAGACTTGCTGTGAACTTCTCTTGTGAACCTCATATTAAAGAAGAGGAGAGGGAGAGTCTCACCTTTTAGATTGTCTTTGTGAGTTAATCCAGGGGCTGGTGTATAGTACATATACTATTTTATAATATGCTTCCAGTCCCAATTGTTGTAGGGCTCTGTAAGGAAAGAAAAACCTGTAGTTGGCCAATCATAGGTAAATGAAAGTTATTTGTTTCTTTAGAAATAATTTTAGGGCAATTAACATTTCCACATAAGATATCCTAGTGTATATAATGGCGGAAATTATATTTTATTTTTCTTGATTCTTTAAAAATGTAATTAAAATATAATTTCATAGCTCGATGGTGGGGTCTATAGACCAAGTTCCAGGATAACAAAGGCTACACAGAAAACACTCTATCTTGAAAACAAGCAAAGAAACAAAATATATATATTTATAATTTTATTATTTGTCTCCTGTCCATCCTGTGTATGGCCACCTCTTCCTTCCAAGTTTATGGGCTCCTCTTTAACTGTTGTTGTTAGCACGTACACGTAAATAAAATCTACATAAAAACACAGCCCTCTGAGCTCCTTCACTGTCACCTGCATGTCTGTGTCTCTAGTACAGAGCACTTAGTATGGGAAAACTAGATGGGCTCATTCCCAGGGAAGGAAGGTTTAGTCCCATCCCATCCCCATCCCCATCCCCACAACCCACCACCCACCCTTTTCTCTTCAGCTCTATGCGATGTCAGCATTCACTGGAATTGCTCAGCTCGTGTTTAGGCAGCCATGTTGTTGATATTTCACAGGTATACAGCTTCCCTGATACAGATAAAGGACACAGTCTCACAGCAGTTTCTTGGTCCTCTGACTTACAATCTTTTCTCCCCTTTTATGATAGTCCCTGAGTCCATTGCCTCACCAGCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGGTGTAGGTGTGTGTGTGTGTGTAGATGTGTGTGTGTGTAGGTGTGTGTGTGTGTAGGTGTGTGTGTGTAGGTGTGTGTATGTGTGTGTGTAGTTGGCTAGATTTACAGTAGCAGGCATGACTCCCCTCCTGCTGAGTAGGCTTTGAGTCTAACTAGACAGCGGTTCGTTAATTGCCACTGTTGTACTTTCAGGGATGTCTATGCTGGTCATAGTGGTTCACGGCATCCTGGCTGGGTAGGACTTTGAGTGCTTTGCTCCCTTAACAACTTGCTTGGACCCTGTGGTACTCTGAGAACTAGTCCTCAGGGAGGACGCTTTTGAGTTGGTTCCAGCTCAAATCTGCTGACTCCTATGTCCAAAATGTGTGTTGTCTTTGGCATTAGGAACTTGATTTTCAACTTCTGGGAGGCAGATCAATGCCAGCAGCAATAAGCCATGTTATTTTGGGAATCTCGTAATGCTCTGACAAACAACTTGAAAGGCCTCTCATACCTGCTACCGGTATAAGCTTTTGGTTAGATAGTCTGTGGCTCTTGAGAGGATGTTTTACATTAATTTAAAGCTATTCTTGTTAAAGATCAACCATGTCTGCCACTGTTACTAAGAAACCAGTACTACTTTAGGGTAACAGGAGGCTGACATAGCTGGTAAATGAGAGGCAGAGTGGTGGAATGGGGAAAGCTTACCCCTGGCTGTAAAGAAATAACTGGCATCAGACTGCTCTCCTTCTAAGAGTAACTCTAAGATCTGAGAAGGAAGGCCCACTGCTTGAAGGCATGGACCCACACCCCAAACAGCTCTTAATGAAAGCGGTTAAGAGACCGTTCTAATACTGTGGATAGGCCTTTCTTCCTTTTCCTGTTCAGCCTTTCATTTTGAAAAGTGAATCCAGGACTCTGTACCTCCTAAACACTGAGATACATCCCTAACAAAGAACCCGACTTTCTGTGTTACAATTGGTTCTTAAAGAGTTTCAGATCTAAAGCTCTTATGAAACACAGCATGATTAAGCAGACAGTAATTGTTAAGGCCATTAAAAGCAAACCAGAGAGCCTACACGTTCCATAGGCCTTAGGACAGCTTTATTTGAGGATCAGCTGAGAGGCAGGAGTAGAAAGTGGTCCAATTGAGATCCCAGAATTCTGCAGTCGTCACAGGAGAGAATGAACAGAGCAGATCCGTCTCAGCTGAGTGAAAGTATGTCCCTGCATCTTACTTATTTCCATAAGCTCATCAAATCCTCTGTGTAAGAAAACAAACCCCCGTGCAAAAACAAACAAGACAGAATTCAAATTTGGGGGCTGGAGAGATGGCTCAGGGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGTGACGGTGTACTTTTATATGTTAAATAAATCTTTAAAAATAAATAAGGAAAAGAGTACTGGCTGTTCTTCCAGAGGTCCTGAGCTCAGTTCCCAGTACCCATGCTCACCACCATCTGTCACTGTAGTTCCAGGGATCCAGAGTCCTCTTTTGGTGTGCAGATATTCATAAAGAGAGAACATCCATATATACAAAATATATAAATAAAAAATCTAAAAAAATAAAACTCCACGTGGAGCTTTCACAGCTTTCCATTTGCCGTACTCAGCATTCCGTCAGGAGTCATCTGGGGTTGGCACCTCGGTTACAGTACTTGCTGTGTAAGCATGGAGACCCAAGTTCAGATCCATGTCGGGTGAGCATGATGGCCTGTCTGGAATGCCAGCCTTGAATGCAGAGGCTCAATCCCCAGGACATGCTGACCTGTGACACAGCCATATTGGTGAGCTCTGGGCTTGCCTAAGAGGCTCTTCAGTTCACAGGGTGGAGGAGTGGTCAGCGGTGGTTCTAGACATCAGCCTCATGACTCTACTTGGATGCATAAACATGTGCACCAGCACGTGTAATCACATGTAGAATGTGTATAATCACATGATAGTGGAGAAGAGGAAAGTATTAGTTTTGCCACCATGTAGGACTAAATGACTGAAAACCAAGAGGAAAAGAAGTGAACATTAGAAACCAGTTCTCAGGCTATCCACTTACTAACTTTATCAGAAACAGAATGAACGTTAAAATTACTTTAAAAGTATTTAACAACAAAAAATATGTTGGAGAGAATTAGATGAAGGAAACAGATCTGGAACAGACATGGTAGTACAGTCAACCATCTCAGCATGGAGGGCAAGAGAATAGCCACAGGTTCAAGGCCTTCTTGTCTACTTACTGAGTCTAGGTCAGCAGGGTAACATAGTGAGACTCAAAGGGAATTAAAAAAAAGAGAGGAAGAGAAAATGGAGAATTTAATCCATGAACTAGGGAACCAAGTGGAAATGATAGAGCAGGAAAAAATATATCTGAAGCTAAGCCCATCAGATTTAACAAAGAGAGAAGAAAAAGAACGTGAAAAGTCAATAGAAAATATAGAAAGGGGCAGGGATCCAGAGTAGATGAGCTCATGGGTGTGTTCTCAGCAGGAAGGGAGACAGAAGGGAAGAGCAGTATTTGAAGGATACTGGGTGAGAATTTCTCCTAAGTAATAAAAGCCATCAAAGCCACAAAGCGTCGGTATAAGTCACAAGGAAGATAGTAACTAGTCACATCACCATAATATTTCAGAGGACAGACAGAAAAATCTGTAAAGCACCTAGAGACAATATTCACAGAATATAAACACGACAGCTCATTTTCAGCAGAAAGGAGGGAGCCCAGAGACTGGACAGTGACATCCTTAAGGTGCAAAAAACTACTAATGGGGGTTGCACCTTTGTGAAAATTGCCTCCAAACACAGACTCAAAATAAAACTGACAGATTTCATCACTCACCACTAGCGACTTAAAATATTAAGGGACATTCTTTAGGCAAAAAATAAATAAATCTCAGACAAGTGTGGTATTGCATGCATAGAGTCACAGTTACTAGAACATTGAGGCAGGAGGATTGTGAGTTTGAGAACTGGTCTGGGTAACTTAGTAAAACCCTGCCTCGATATTTAAAAAAAAAAAAAAGAAGGAAGGAAGGAAGTGAAAGGAAGGAAAGAAGAAAGGAAGAAGGGGGAAGGAAGGAGTGTGTATAGAGTGTGGTTTGGTGGCAGAACACCTGTTAGTGTGACCCCCATGGTGTTATCCTTGTACCAGTAGAGGGAGAAGTGACAAAAAGGAGGGGAGACAGAAGAAAGTGGGGCAGGATGGTCCCAGATAGAAGCATGGTATGCAGGACTAGGTGAAGAGCAAGAGAAGCAGGAAGTGCATTTAAAATAATACTTTATGTTCTGTGGCCACAGTGGCAGTGCTCACAATCAGTCATGCATGGATACTGTGTGGTCATGTGACTACAGTTCCCACAGTTGAGTGGCAGAATTGTAGAGAGACTAGGGCAGGTCTGTGGTGCCTCCCCATCTCCTCCCCCTCCCCCAGGTTGACTTTTTAATCAAGGATCGACCTGTGACAGCTTTGCTAAGATGTCCTTGAGTGAACGGCAGTTAGGGTTACCTATACCAAATCTGCCTTTTCTTCTGCTAAGCTCAGCCTCAGACTTTTATCAATCTTGAGATATATTGATTATCTCCTAATTCTCCACCGTTTCTCACAGGCATTTTTTCCTGAAGTGCTTTTACATGGTAGTGCTTATCTGAACCATAGCTCCCTGGAGACTGAGGAAGTTATGGATGGTTGGGTCCTCTGGAAGAGCACCAGGTGGGACTGGAGAGATGACTCAGAGGTTTGAGAGCACCAACTGCTCTTCCAGAGGTCCTGAGTTCAAATTCTAGCAACCACCTGGTAGCTCACAACCATCTGTAGGGATCTGGGACCCTCTTCTGGCCTGTAGGCATATATGCAGGTGCAACACTGTGTACATAATAAATAAATAAGCAAACAAATAAATGTTTTTTTTAAAAAGAGAAATAAATAAATAGATTTTTGTTGTTGTTGTTGTTGTTTTTAAAGAGCAAGAGCAGCAGGTGCTCTTAACCACTGAGCTCTCTCTCCAGGCCCCCAAATAGGTTCCATAGCTTTCGTCATGTTCCCCACACTGACTTTTTACTTAGTTGATAAATAGTCTTTGCTCCTGCTAGGTAGATATGGGGCCACAGGAGCATGCATGACTAATGTGCTATTTGATTTTGTGGCTGATATAAATGTGAGTGGAGACCTGGGTCGGTAATGAGCACACAGGTCACCTTTTGCCCTCCCCCTCTGGGTGACCGGAGAATCAACACCGATATGTTTCACTGTATCTTATTAACAGAGAACAAGGCTTATGCTTGTAAAATATATGCATTGTTTGTTTTATGGGTTTTCAAATGATTTCCCCAG
Seq C2 exon
GAAACATAACTTATGAAACGATGGTGGAAATTCTTCGCGACAGACCCAGTGGCATCAACATGAAGGGAGAATTCCTGACCACCGCAAGCATGGTTTCCATTTTACCCCAGGATCCCAGCCTTCCCTGCATTCACCTCCTTACAGGGACTCCACACCCTGAGAGGTAAAGTCTCCCAACACTGTGACCACCGAGAGGTCACGGCTGGGGTACAATCATTAGTGTGTAGGTGATTTTTGTCAATACAATTTTTATAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018657:ENSRNOT00000025255:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=NA C2=0.102
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=FE(28.2=100)
A:
NA
C2:
PF0357710=Peptidase_C69=PD(7.3=32.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]