RnoINT0132786 @ rn6
Intron Retention
Gene
ENSRNOG00000002794 | Selp
Description
selectin P [Source:RGD Symbol;Acc:3656]
Coordinates
chr13:82443471-82445419:+
Coord C1 exon
chr13:82443471-82443656
Coord A exon
chr13:82443657-82445233
Coord C2 exon
chr13:82445234-82445419
Length
1577 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAT
5' ss Score
7.87
3' ss Seq
TCGTTGGTTTTTCTGTTTAGCTG
3' ss Score
7.12
Exon sequences
Seq C1 exon
TCCAAGAGTGTGGAAAATTCGACATCCCGCAACACGTTCTCATGAACTGCAGCCACCCTCTGGGGGACTTCTCCTTCAGCTCACAGTGCACCTTCAGCTGTCCTGAGGGCTATGACCTGAACGGACCCAGTGAGATGCAATGTTTGGCCTCTGGAATCTGGACAAATAATCCCCCGCAGTGTAAAG
Seq A exon
GTACATCAACCTTACTTTTTCCATCCATACTAAATAATTAGAACCTGGGAGATCATTAATGGGGATGGTGGCCTTTCTGTTAAAAACTTGAGAAATAGGGACTGAAAAGGTGTCTCCATGGTTAAGAACCCTGGTTGCTCTTCCAGAGGATCCAGGTTCATTTCCCGGCACCTCCATGGCGATTCACAGACATTTATAACTCCAGTTCCAGGGAATCCATTGCCCTCTTTTGGCCTCTTGCAGGGACCAGGCAGACACGTAGTATACTGATACACATGTGGGCAAAACACCCATACACATGAAATCTTTTAAAGTAAGATAAAAGATAAAACCTCAAGAAATATTAAGTTCTGCATTAGATGGAAATTCAAGTTACCACAGTTATTAGCCAAGCAGGCTAACCTGAATTTTCTTTTTCACAATGCTTCTCCTTCCTTGCCTAGAGGTGGTGGTTAATTTTTTTTAATCCCTAGGGGAAAACATTGCAAAGGAACTCCTTTCCTTTTGGTACTTGTAAAGCATGGGCATTTGGGTTCTACTTAACCAACCAAGAATGACCTTAACTGACACTTTGAGAAAGTATAAGTGCCACAGAATCCTAACACATCCTAAGTCTGGATAAAACTTGTCCTAGAGTGAACGTCACAGCTCTATGCATATTCTTGGCCTCCTTATGCTCATCCCTGAGCAGCCCTGAAGGAGGAAGCCTGGTTATAAAACAGTCCTGCAAGAACACTCATTCTAGCACTGGTCTAGCTGTAGCTTCATTGGGAAGAGAGAGACTTGTTTAATATGGCCAGAGATGAAACAACGGAACACCTGGGGTGGGGAGAGTCCCAGGTCCTGAGTATCAAAGCAAGTGTCAGGACATTGGAATATACAAGATCCTATCCCCGACCCCCCACATCTTAGTTGTAGCATCAATGAAACTTGGCCATCTTGGAGAGAAGCCAACCTGAATTGTCAATTTTAAGTTTCCTTCCACCAGTTCCGAGCTAGGTGGTATAAATCTGGAAAACGGGATCAGTCAGTGGAAAAGCAAAGGGCTTATTTTGCTATGACCAAAATAGAAAGATCTACTCTTTCCCTATCTCCTCATCCCCAGGTTCAGAATGGTGCCATTCATACATCTCATATAAGAGATGTATATCAATCCATAGACCTTCAGGAACAGACATAATGCATCATTCAGATGTTTTATCTAAGATGGCAAATGCATCAGTGCACAGATACTAAATGAACTTCAGGGTCAGACTTGTAATGCAGAAAGCATAAAGAGTGCTAAGAGCTTGGAGGACTTTTTTTTTCTGTTTTCTTTTTTCTTTTTTTCGGAGCTAGGGACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGTGCTCTACCACTGAGCTAAATCCCCAACCCCTTGGAGGACTTTTTAACAAGGTTCAGGTCACTCTGAGATCTGGTACCCCATGTCTGGACATCTGCCCCGCTCCATCTAGTTTCCATAGGCCGAGCCATGCTGTTCTCTGTGCAAATGGCTTCTGTCCACCTGGATTGTTTTTCCATTTCTTTCTCGTTGGTTTTTCTGTTTAG
Seq C2 exon
CTGTGCAGTGCCAGAGCCTGGAAGCCCCTCTCCATGGAACCATGGACTGTACACACCCATTGGCTGCCTTTGCCTATGACTCCAGCTGTAAATTTGAGTGCCAGCCTGGATATCGGATGAGGGGCTCTGACATACTCCACTGCACTGACTCTGGTCAGTGGAGTGAACCATTGCCAACCTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002794:ENSRNOT00000003759:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.1)
A:
NA
C2:
PF0008415=Sushi=WD(100=92.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCCGCAACACGTTCTCATG
R:
GGTTGGCAATGGTTCACTCCA
Band lengths:
342-1919
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]