DreINT0132425 @ danRer10
Intron Retention
Gene
ENSDARG00000009123 | sele
Description
selectin E [Source:ZFIN;Acc:ZDB-GENE-041014-221]
Coordinates
chr20:34072291-34072753:-
Coord C1 exon
chr20:34072562-34072753
Coord A exon
chr20:34072483-34072561
Coord C2 exon
chr20:34072291-34072482
Length
79 bp
Sequences
Splice sites
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
3' ss Seq
ACTTTCACATCATTTTGCAGTTG
3' ss Score
8.76
Exon sequences
Seq C1 exon
TTGTTAAATGTGAACCAAATGAAGTCAATGCATTGGATCATTCTAGTAAGCAGTGCTCTCATCCTCATGGAAACTTCGCATATGACTCTCAGTGTGAATATTCATGTGAGGAGGGTTATGAACTGAAGGGTTCCAGTACAACGAGATGCAATTTTACAGCGGAGTGGACAAGCAAACCACCATCTTGTGAGC
Seq A exon
GTAAGTGGAATTTACAGTGCAAATAAAAACAATGCATTTCATCACTCATTTTTTAAAGCACTTTCACATCATTTTGCAG
Seq C2 exon
TTGTTCAATGCCCACAGCTGAACAAACCACTGAAAGGTGGCATGCAGTGTAATCATCCGATGGGTCAGTTCAGCTATCAGTCCAGCTGTGAGTTTGTGTGTGATGAAGGATACAAACTGCGAGACTCCAGCTCTTCTACTCTGATCTGTGGAGCAACGGGACACTGGAATGATTCACAGCCCACTTGTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009123:ENSDART00000136834:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PD(93.9=95.4)
A:
NA
C2:
PF0008415=Sushi=WD(100=92.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGCTCTCATCCTCATGG
R:
AGTGGTTTGTTCAGCTGTGGG
Band lengths:
174-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]