BtaINT0130639 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011515 | SELL
Description
selectin L [Source:HGNC Symbol;Acc:HGNC:10720]
Coordinates
chr16:38162749-38168960:-
Coord C1 exon
chr16:38168853-38168960
Coord A exon
chr16:38162938-38168852
Coord C2 exon
chr16:38162749-38162937
Length
5915 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGC
5' ss Score
9.86
3' ss Seq
TGTTGTTTCTTTTCTCATTGAAG
3' ss Score
-0.31
Exon sequences
Seq C1 exon
CTTCTTGTAAACCCTGGTCATGCAGCGGCCATGGACAATGTGTGGAAGTCATCAATAATTACACCTGCAACTGTGATTTGGGGTACTACGGGCCCGAGTGTCAGTTCG
Seq A exon
GTAAGCTGCTTCTGTTTCTTTGTTTCTTCCTATGTAAAGTATTATAGTTTATGGAAGTTGGTTGGGGGAAAATGATACTAGCCATTCTGAGAAATGAGAAGTTTTGATCAGTAGGCCATGCTTGCACAATATTGTTACTTTTCCGTAAAGATTTCATAAGTCAGCATGAAGTTTCAATTCACTTCTCAACAAGTCCTTTTGAATGCCACAAGAGCATTGGCATTGGAATAAAAGCTGTAAGGATTACAATAATGAATCAGACCTGATAGATTCCGGCTGTTAAGGAATGGATAAGCTAGTGAGCTTGTTGGATTCATTAGAACTCTGAATCTGAAAGAAACAATACCATTTATCATTAGGAGGCTGAGTCACCCATCTTATGTTTTACATTATCCTCAAGATCATGACAAAGGCAAGACCAAAAAGAAAAATTCACATAATGATATATGGTATCTGTCAGAAAATATAATAATAAATTCAATACATTGGCTGGCATTTTAGGGGACGAGGATAAATGTATTACAGATTCTTACCTTAAAGGATTTACAGTTAACTAGTGGAAATTATGGGTTTCCCTGATGGCTCAGCAGTAGAGAATCTGCCTGCCAATGCAGGAAATGAGACGAGGGTTTGATACCCTGGAAGAGAAAATGGCAACGCACTCCTGTATTCTTCTCTGGGAAATCCCATGGACAGGGGAGCCTGGCAGGCTAGAGTCCATGGGGTCGTAGAGAGTCAAATATGACTTAGTAGCTGAGCATGCACACAGTGGAAATTACACATGCTTATAATTTAATCTGATGGAAAGCCAGATATGCTGGAGGAAGCCTGTGAAGACTGAAAACTGCCTAATAAAAGTCTCTAGCCTTTATTTGATAGTGAGAAACCACTTAGTATCTGAACACCAGCATTTAGGGCAATTATCTTAGAAGCAGTGCATAAGATGGACCAGAGAACAACAAAGAGAGAAGATGAGACGATGGAGAGCATCATGAGGAGTCCACTGAAATCATTCTGAGTTGTGGTGGTAGAAACAGAAAGGAAAGAATACATAGATTGAAAGACATGGAGTCTTTGACCTAGTCAACTCACTACTGAAAGAAAACTTCAAGTCCTTTGATTGATATTGGTGGAGTTTCAAAACTACATTTGAAGTATCTGGTGAATAAAATAGAAAATTATAATAAGAAAAGAGCAGTGTTTGCAATGAATAAGGAATTAAAGCCAAACAAATTTAAATGATCAACCGACTGGAACAGCTCTGGCTCATTTCACTCAATTCCTAAGCCCTGACTTCTATCCAATACTTTATACTCACTCCATTTCTAAATTTTTTAAAATTATTTTATCATCAGCATGCCTATTTCACTCCTTTTTGAACATTTTATTCTTTTTTTTTTTTTCTGTCTTGGTTTCCATCATACAACTCTTCCTGGTTTTTTTTCTACCTATGATTGTTTCTCCTTGGGTTTCTTCATGGGCACTTACTCAAGCCCATATATTTATTGTTATTTCTTATCTTCCATCTTTCATCCATTGCTCTTCTCACTTTACATGTCCCCTTTGGTCAAACCTAGAAACTTCTGCGGAAGCACACAGCTATGTGAGCTTTGGACAGACAAATCTGTTTCCAGCCCTGAACTCCAAATATGCTAAGCATAATCTTTGCGATGCCCCAAATATTGAAAAATCAATTTTCCCCAGCCAGCTTTCCTTTTTGTATTCCTTATCTCAGTGTGTGGTACCACCATTTATATGGGTACCCTGGTATAAAACTCTCTCACCTCCTCCTACATTTATGCAAAGTAACACACTACTCATTTTTATAACTTAATGTTTCTCCAACTTGTCTTCTTGTTAACTCTACACTATTGCCTTCATTATCTTCCTCCTAGATTCTTGCAATAATTTCTGAGCTGAGTTCCACATCTTTAAATTAGCTCCCCTCAAATATATTATTCATACTATAGGCAGTCTGATAAATTTAAAAAATCAAGTAAACATCACACATATGTGGCCACCCACCGTTTAATTTCTACCTATCATTTGTCCTATAGGATGAAATTTGAACTTTGAAATCCTCAAGGCATAGAATAATGCTTGATATATAGTAGATACTCATTAAATTGATGAAAAGATAGGGGCCTTTTGCCTTAGCACCTGTCTTTCTATCTAATCTCATCTCACATCATCCCCTGCCTCCTCTTTCCTTCTAGTTTTAACATCAAAATGCTTGTAGTCTTCCACACTTACCATATTTCTTTATAGCACATTGACATGCTCATGGCTTCCACATTTTGCACATGGATAAAATACCTATTCAACTGGAAGATAACCGTTCAGGGACCATTTCTTTCTGGAAGTTTTATTTGGATGCCAAGACAGGCTAAGCATCCCTATTCTGTGTTCCAGTAGCTCCACATATTTGTTTCTTATTTATCTGACATTTGTTGAAATCATCCGTTTAGTTGTCTGTATGCCTCAGCAAACTGACAGCAACTTGAGATCAGTCAGTATTTTATTTATCACTGTATCTGTAAGATTGAGACTTAGGCACCTGCTTGTGGGCATGAACTGAATTGGACAACATAAGTGACTTTCATTTGGACTTGTACTGTAGATGGAAAATATTAAAATTCTTCTAATTTCTTGAATTCATCCTTCAATTCTTCATTGATCTCTTAAGAACAAGGTTAAAATGATGGCTCACATTTGATAAGGAATAAGACACAGAGTTTCAATATTTGCCTAAATGATGTGGCAGGACTTAAAACATGAAGACTGAATTCCAAATCTTAATTTAATCTATTATGCCACTGGTCAGAGAAAGGAAGTAGACATACTTTCTGCAGAGGACTGTCAAAATCAGAAGAACTAAAGTTCTGGAACTGAGCTAGAGATAGTGAAGACAGAATCCAGGCTTAGATGCTTCCTAAAGCCTATGCCCCACCAGTAATGCTGAAGAAGCCGAAATTGAACAGTTCTATGAAGATCTACAAGACCTTTTAGAACTAAGACCTAAAAAAGATGTCCTTTTCATTATAGAGGACTGGAATGCAAAATTAGAATGTCAAGAAACACCTGGAGTAACAGGCAAATTTGGCCTTGGAGTATGGAATGAAGCAGGGCAAAGACTAATAGAGTTTTGCCAAGAGAAGGCACTGGTCATAGCAAACACCCTCTTCCAACAACACAGAAGACTCTACACATGGACATCACCAGATGGTCAACATCGAAATCAGATTGATTATATTCTTTGCAGCCAAAGATGGAGAAGCTCTATACAGTCAGCAAAAACAAGACTGGGAGCTGACTGTGGCTCAGATCATGAACTCCTTATTGCCAAATTCAGACTGAAAATGAAGAAAATAAGGAAAACCACTAGACCATTCAGGTATGACCTAAATCAAATCCCTTATACAGTGGAAGTGAGAAATAGATTTAAGGGACTAGATCTGATAGAGTACTTGATGAACTATGGATGGAGGTTCATGACATTGTACAGGAGACAGGGATCAAGACCATCCCCATGGAAAAGAAATGCAAAAAAGCAAAATGACTGTCTGGAGATGCCTTACAAATAGCTGTGAAAAGAAGAGAAGCAAAAAGCAAAGGAGAAAAGGAAAGATATAAGCATCTGAATGCAGAGTTCCAAAGAATAGCAAGGAGAGATAAGAAAGCCTTCCTCAGCTATCAGTGCAAAGAAATAGAGGAAAATGACAGAATGGGAAAGACTAGAGATTTCTTCAGAAAATAGAGATACCAAGGGAACATTTCATGCAAAGATGGGCTTGATAAAGGACAGAAATGGTATGGACCTAACAGAAGCAGAAGATATTAAGAAGAGGTGGCAAGAATACACAGAAGAACTATACAAAAAAGATCTTCATGACCCAGATAATCACGATGGTGTGATCACTCACCTAGAGCCAGACATCCTGGAATGTGAAGTCAAGTGGGCCTTAGAAAGCATCACTACGAACAAAGGTAGTGGAGGTGATGGAATTCCAGTTAAGCTATTTCAAATCCTGAAAGATGATGCTGTGAAAGTGCTGCACTCAATATGCCGGCAAATTTGGAAAACTCAGCAGTGGCCATGGGACTGGAAAAGGTCAGTTTTCATTCCAATCCCAAAGAAAGGCAATGCCAAAGAATGCTCAAACTACTGCACAATTGCACTCATCTCACATACTAGTAAAGTGATGCTCAAAATTCTCCAAGCCAGGCTTCAGCAATATGTGAACTGTGAACTTCTTGATGTTCAAGCTGGTTTTAGAAAAGGCAGAGGAACCAGAGATCAAATTCCCAACATCTGCTGGATCGTGGAAAAAGCAAGAGAGTTCCAGAAAAACATCTATTTCTGCTTTATTGACTATGCCAAAGCCTTCGACTGTGTGGATCACAATAAACTGGAAAATTCTGAAAGAGATGGGAATACCAGACCACCTGACCTGCCTCTTGAGAAACCTATATGCAGGTCAGGAAGCAACAGTTAGAACTGGACATGGAATGACAGACTGGTTCCAAATAGGAAAAGGAGAATGTCAAGGCTGTATATTGTCACCCTGCTTATTTAACTTATATGCAGAGTACATCACGAGAAACGCTGGGCTGGAAGAAGCACAAGCTGGAATCAAGATTGCCAGAAGAAATATCAATAACCTCAGATATGCAGATGACACCACCCTTATGGCAGAAAGTGAAGAGGAACTCAAAAGCCTCTTGATGAAAATGAAAGAGGAGAGTGAAAAAGTTGGCCTAAAGCTCAACATTCAGAAAACTAAGATCATGGCATCCGGTCCCATCACTTCATGGGAAATAGATGGGGAAACAGTGGAAACAGTGTCAGACTTTATTTTGGGGGGCTCCAAAATCACTGCAGATAGTGATGTAGCCATGAAATTAAAAGATGCTTACTCCTTGGAAGGAAAGTTATGACCAACCTAGATAGCATATTCAAAAGCAGAGACATTACTTTGCCAACAAAGGTCCATCTAGTCAAGGCTATGGTTTTTCCAGTGGTCATGTATGGATGTGAGAGTTGGACTGTGAAGAAAGCTGAGCACCGAAGAATTGATGCTTTTAAACTGTGGTGTTGGAGAAGACTCTTGAGAGTCCCTTGGACTGCAAGGAGATCCAACCAGTCCATCCTAAAGGAGATCAGTCCTGGGTGTTCATTGGAAGGACTGATGCTGAAGCTGAAACTCTAATACTTTGGCCACCTCATGCAAAGAGTTGACTCATTGGAAAAGACCCTGATGCTGGGAGGGATTGGGGGCAGGAGGAGAAGGGGATGACAAAGAATGAGATGGCTGGATGGCATCACTGACTCTATGGACGTGAGTCTGAGTGAACTCTGGGAGTTGATGATGGACAGGGAGGCCTGGCGTGCTGCGATTCATGTGTCCGCAAAGAGTCGGACACAACTGAGCGACTGAACTGAATTGAACTGAACTGAAAGCTTTTATCTTCTCCCATTGTAAAGAAGACAGTTATGGATACCCAGTCTTTCTCTGAACCTCCTACTTCGAACACTCTAGCATACTTAGGGTCTCTAATGTGGCAACTGTTTCCAAACTGAGCTGGTCATTCCCACTTAAACCTGTCTACAAAGTTCTTTGTCCAGGTAATGCCAAAGATAATAAGATTGCTTGCATGCAGATTAGCTAATATTTCATTAAAAGCTTCCCCTGAACCAGACTTTAAATCCTTGACTTGCATTAAATTATTTAAGTACCAAACTCTGAGAAGTCAATACATTTATCATTATTCCTCTTTTATAGATAAAGAACCTAAAGCTGGAAGGATTAAATCACCTTGCTTAAAGATACTTGGTTATCAAGTATCAGAGCTAAAATTCAAACCCGGTCATCAGGTCCTCTTAACTCTGTTGAGTGTTGTTTCTTTTCTCATTG
Seq C2 exon
AAGTGACTCAATGTGTGCCTTTGGAGGCCCCAAAGCTGGGTACCATGGCCTGCACTCACCCTTTGGGGAACTTCAGCTTCATGTCGCAGTGTGCCTTCAACTGCTCCAAGGGAACAGACATGATTGGGGTTGAAGAAACCACTTGTGCACCATTTGGAAATTGGTCATCTCCAGAACCAACCTGTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011515:ENSBTAT00000046865:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=81.1)
A:
NA
C2:
PF0008415=Sushi=WD(100=90.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development