RnoINT0132773 @ rn6
Intron Retention
Gene
ENSRNOG00000002776 | Sell
Description
selectin L [Source:RGD Symbol;Acc:3655]
Coordinates
chr13:82373756-82376794:+
Coord C1 exon
chr13:82373756-82373863
Coord A exon
chr13:82373864-82376608
Coord C2 exon
chr13:82376609-82376794
Length
2745 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
3' ss Seq
TGCTTCTCGCTCCATGACAGTGA
3' ss Score
5.58
Exon sequences
Seq C1 exon
CCTCCTGCCAACCAGAATCTTGCAACCGCCATGGAGAATGTGTGGAAACTATCAACAATAACACCTGCATCTGTGACCCAGGGTATTATGGGCCCCAGTGTCAGTATG
Seq A exon
GTAAGCCTCCTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTCTTCTTGCCAGTAGTCATGAGACCCATAATAGCTTAGTACAGCAGCTGGTTGGGACAAAATAGTGCCAGTTGGGACAAATCAATATTAGCAATTCTAAGAAATGGGAAGTTCAGAACAGAAAGCTAAGCTTTCACAATGGTATCTTCCGGTAAAGATTTCCCAAGACAGCATGCAATTTCAATTTACTTTACAAGCGGTTTGAAGTGCCACAAGAAACAATCGGTTGAGATTTGTTAAAGCTGAGCAGGTTACAGTAAAAAATCAGGTGTTGTAGAGCCCTACTGTCAAGGATGTCATAGTCTACTGAGCTTGCAGGATTAAGAACCATGAGGTCAGACAGAAACAATTCCATTTCTCACTAGGAGAGTGAGGTATCTGGAAGGTACTCCTGCTCTTCTGTAGACAGATGTGAGAAGGAACAGTAAAAGAAAAACTCACATCTGATACACAGAAGATGCCAGAGTTATTTAATAACAAACCCTACACACTTATTTTGGTTGGGTATTTCTGGAGAATACAGAAGCAAATCATTATAAATTTTGTACTTATGCAATAGATGGTAAATAGAAATTATATATGTTCAGGATTAAGTTTGAAGGAAAATGAGCTTGTGGCAAGATCCCCTAATAAAATATGTGTCCTTTTTTGCAATGAGTGGCCACTCGGTATCTTATTGCCAGAACTGAGGGCAATTATCCTAGAAACAGCACAACGGACCACTGCTAGGATAGCCAAGAAAGAGATGGTTGGGTTATCAGAACCCTAGGAAGTCACTCAGAGATCCCGTAGGAGAACTGAAAAGCAGAGAATACGCATGTGTGAAGAGAGAGGCTTGGGCTCAGCCAAGTGCTAGGGAAAGGTGCATCAAGTCTTCAGGTTGAGCCTGGCTGAGTTTGATGTGTCTGCTACACACAGTGGAAAATTATAGTAAGAAGAAAAGTAATGTCTTTAAGGAATAAAGGACTGACTGAAACTAAACTTAATTTCAGTATTAACCAACTGGACTAGATCTGAGTAATTCACTTATTTCTGAAACTGTGTCTCTTCCCCAGAACGTTACCTCCACCACATCATTGGTCTGCCCTTTACTTTGCTCCTCTTTAAACATCATGTTTTCTTTCTTACTTCCCAGCATATCCTTTTCTGTCTTTTTTGTTTGTTTTGGTTTGGTTTTTGGTCTTTTGTTTTCAAGGTAGGGTTTCTCTGTGTGGCACTGGCTGTCCTAGAACTTCCTCTACAGACCAGGCTGGCATCAAACTCAGAGATTCACCTGCCTCTGGGGTTGAAGGCATAGCCTCTGGGGTTGAAGGCTTATGCCACCACCAGCTGGCTTCTGATTGTTTTGTTGACTATAGTGGCTTCTCTTGGGTTCTTTCATTTGTACTTATCCAAGCCCATAAACTCTTAGTCTCAGCATATGTCTTTTCTCTTGTTCTGACTTGGTTTGTTTCTTTCCTCAAATTTTCTGAGTTTTATGAATTTATATATCTATGTAATCTTTGGATTAACAGATGTGGTTTCAGCCATAACCTCTGAATATGCTAAGGATGTTGTCTTGGATGTCTACAGCTCAAGTGTTCCCAGCCAGTTTTTTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGGCTGTAACTACACCCCATGGAAATAACACATAAAATGACTCTGGTGTCACCCTGTCACCTACTCTAACACTTCTGCAAGATAACACATTGCTAGTTCAATTTCTAAAATTGTATTTCTTTTATGGGGCTGAAGAGATTGGTTAGCTTAGGAAGACTGGTTGCTCTTACAGCAGACCTGAGTTCCATTCCCAGTAACCACATGGTGGCTAACAGACATCTATAACTCCATAGATGATATAACACCATCTTCTAGCCTCCTGGGGCTCCAGGCACACACATAATACCCACATATACATGAAGGCAAAACACCCATACATGTACAATTCAATTAAGTAATTTTTATTAATTAAAAAAATGGCAATGTCACGCTTGCATACAGTACACAGTGATTATATCCACCGCCTCTCCCCATCCCACATCTGCCAAGCCAAGCCCCTTCTTCCCAGCTAGTTCCCTTGGTAATTACATTTTATAACTTGTTACTTCTCCAGTTTCTCTCCTACCTTTCCTCTCATTGCCTTTCCCCTGTTACTGTTGTGGTCCCTAGATGAGCTCCAGGAGTTTAAATGAGCTCCCTCCAAAGAAGTCACTAATGCAACAGGCAAGCTGACCAATTAAAAATCATCAGAACACACAAGACACAGATGACCATTCACTCTTTAGTTTGTTCCCACCATTTGTCTTGGTCAAGTTTGAGCTCATTAAGTTCCAAATGATGCTCAACACATAGTAAATGGTCATTAAGGGAATGAAAAGAGTGAGTATTTTTTCCTTTGCTCCTTTCTCTCTAAACACAGCCTGTCCTATCTTTATAGCAATATCAACATTTTGGCAGTTTTCTGCGTTCTACAGTTTGTGTTCTGTTGGCTTTGCTTATGACCTTCTCTCTGATTCTGCATATAGACAACACACCTGATTATCTTCGAGGCATAGTTCAGAGACCATTTCTTCCCAGAATATTTCTTTGGGCTCCAATAGAGACAAACAATTAATCAGGTAGCAGAAACAACACTCAAATCCATTGGATCCTCGTAACTCTTCTCAACTCTGCTTCTCGCTCCATGACAG
Seq C2 exon
TGATCCAATGTGAGCCTTTGAAGGCCCCTGAGCTGGGTACCATGAACTGTATTCACCCCTTGGGAGACTTCAGCTTCCAGTCACAGTGTGCTTTCAACTGTTCTGAGGGAAGCGAGCTACTTGGGAATGCAAAAACAGAGTGTGGAGCATCTGGAAACTGGACATATCTAGAGCCAATCTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002776:ENSRNOT00000003733:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=86.5)
A:
NA
C2:
PF0008415=Sushi=WD(100=92.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]