RnoINT0133921 @ rn6
Intron Retention
Gene
ENSRNOG00000009350 | Sez6
Description
seizure related 6 homolog [Source:RGD Symbol;Acc:619780]
Coordinates
chr10:64870070-64870515:-
Coord C1 exon
chr10:64870377-64870515
Coord A exon
chr10:64870267-64870376
Coord C2 exon
chr10:64870070-64870266
Length
110 bp
Sequences
Splice sites
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
3' ss Seq
CTGATCCTCCCCTTCTACAGGCT
3' ss Score
9.68
Exon sequences
Seq C1 exon
CCGTGTGCAGCGGGGAGATCACAGACTCTGCAGGCGTGGTGCTCTCTCCAAACTGGCCGGAGCCTTATGGCCGAGGGCAGGACTGCATCTGGGGTGTGCATGTGGAGGAGGACAAGCGCATCATGCTGGACATCCGAGT
Seq A exon
GTGAGTGCCTCGGGTCAGGCGAGCCGGCTCCAGAGGCTGGGGACGCCTCTAGTCCAGCCCATCTCCGCCCCTCCCCCAGCCCCTCCCGCTCTGATCCTCCCCTTCTACAG
Seq C2 exon
GCTGCGCATAGGCTCTGGGGATGTACTGACCTTCTACGATGGGGATGACCTGACAGCCCGGGTCCTGGGCCAATACTCAGGGCCCCGTGGCCACTTCAAGCTCTTTACCTCCATGGCTGATGTCACCATTCAGTTCCAGTCAGACCCTGGGACGTCGGCGCTGGGTTACCAGCAAGGATTTGTCATCCACTTCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009350:ENSRNOT00000048543:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(40.7=93.6)
A:
NA
C2:
PF0043115=CUB=PD(58.3=94.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGAGATCACAGACTCTGCA
R:
TGGTGACATCAGCCATGGAGG
Band lengths:
256-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]