RnoINT0138598 @ rn6
Intron Retention
Gene
ENSRNOG00000018525 | Slc4a9
Description
solute carrier family 4 member 9 [Source:RGD Symbol;Acc:628811]
Coordinates
chr18:29361039-29363597:+
Coord C1 exon
chr18:29361039-29361111
Coord A exon
chr18:29361112-29363528
Coord C2 exon
chr18:29363529-29363597
Length
2417 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAT
5' ss Score
7.87
3' ss Seq
TCTCTACTTCTTCCTGCCAGTTC
3' ss Score
9.26
Exon sequences
Seq C1 exon
GGAGCAGAGGTTGACGGGCTTGGTGGTGTTCATCCTTACAGGTGTCTCCATCTTCCTGGCCCCCGTGCTCAAG
Seq A exon
GTACATGTTTGGCCGGGATCAGTGGGACTGATGCTGGCTGAACACTTACAGTGTCCCAGGAACTGTGTTTTCTTCTCACATGGTTACATTCATTTTCGTGCTGACTAACCCTGAAAGACATACATACTCTACAAATGAGAAACCTGAAGGCTAAAGATGAAATTTCTAAGTGCCCACCATGAGAGCCATTTCTCAGATAAAAAACAAGACAAAACAAAGCAAAACAACAACAACGACAACCCCAGACTTCCACTGCATGGTGTTTTATGCCTGTAATCCTAGAACCAGGAGGTTGAGGCAGGAGGCTTGTTTCAAGTTTGAGACCTGCTTGTGTACACAATAAGTTGCAGGCCAGCTTGGGCTACAGTGTGAGACTCTATGTGAAAAGAAACCAAACAGCCAGAGAAGTCTGAGATGGCTCAGCAAATAAAGGGTTTTGCTAAGAAACCTGAAGTTTGATATTAGACCTGGGTCTGTGTGATGGAGGGAAAGTACGAATTCCAACAAGTTATCCTCTGACCTTCATACTACACACACACACACGCACGCACACACGCACGCACGCACACCACATACATGCACACATGCATGCACACACTACACGCACACATGCACACACACATGCACACACGCATGCACACACACACCACACACGCATGCATGCACACATGCACACATGCATGCACACGTGTATCAATAACAACAGAAGTGTGGTGGCTGCATACTTGCAATTCAAACACTTTAGGAGATAGAGGGACAAGAATTCAAGTTCAAGGCTAGCCTCAGTTAGAAAGTAGGTTTGAGCCAATCTTAGTCTACATGAAACCTTATCTAAAAATATAAAAAAACGTTTTTTAAATGTACCTAATTTCTTGGCCAGTAGGCTTTTTGTTTAGTGGAATAGGATATGGGGATGCCATCATCCCCTGGGGTTCCAGCACCGACTTTGTTCCAGCCCCCACAACAAGCTGGAGACAAATGCATACCTCATATCCCAGGGAGACTCTGAAGCAAAAATCCCTTTATCTTTCTCAAGGCTTGTGAAACCTCTGCTGGGCACCGCACTGAATAGGGATGTGAGACTAAACTTCATCAGAAACTTCACACACACACACACACACACACACACACACACACACACACACACACCCCTACATAACTATAGACGAAAGCTATAGAAGAAAAGGTCAACAAGCCAAAGCAGTCACGTAGGGTGTGGAAATGTCAGACAAGAGTCACTGGCAGGAGGACAGGAGGCAGTAGGTTAGGCAGGGCCAAGGTCATGGAGACTGGGTAAGCGTAATGCAGTCGAAGAGCCAGATGGACAGGATTAACCACTTGCTAAGTAGGTTGACTCTCATAAATGGTATACCAACCACTGTCCCAGGAACTGGAGAGATACAGTGGTGATAGCATATGTATGTCTCTGTCCTCCTGGGAGTCTGGTGACAGAGGACACATTTCTAAAAGTTAGCGCAATATGGTAGCTTCAGCGGATAGCGTCTACGAGAAAATGAAAGCAGACACGGCTATGAAGAGCGCTAGGATGGCCCGGTGAGATGGTTCAGTGGGCAAAAGCACTTGCCATGCAAAACTGATGACCGGCCTGAGCACAGTCCCCAGAACCTATGGTGGAAGGGAAAGACCCACTCCCACAAGTTGACCTCTGACCTCCACGCACAAGCCGCGGCACACATCGAATAGCAGTAGTGAATAAATATTTTAAAAAATTTGCAAACAGTGCCAGGGCCACTTCTGATTGAGCATTGAAGACATTTGATCATTGGTTGGTTGGTTGGTTGGTTGGTTGGTTGGTTGGTTGAAACAGGATCTCACTTTGTAGCCCTGGCTATCCTGGCCCATGCTACATAGACCAGGCTGGCTTTGAATTTATTGCCATCTTCCTGCCTCTGCTTCCTAAGTGTTGGAATCACAGCTCTGTGCCACCATGCCCAGGTGAGAGGAACATTTTAGGAGGAAAGAATAATAAAGCAAAGGGCTTGGAAAGGGTAAGGGACAAATGCCAGCATGTGAGTGGAGAGAGGACAGTATCAGGAAGCACGTAGAGCAGAGGGCAATGTGACAGATAAGACCAGCCAAGGTGGGACAGTGTCGTAATCACGGCATCCAGGAGGCTAGAGCAGGGGTGTGTAGCATTGTAGGCCAGCACTGAATACCATGATGGGATACAAAAACTGGAGAGGTAGGGGCAAGTTACTTTGTCCTCATCTATCTGTAAAATGCAGAAAATAATAGTAATCTTACCTCCTGTGATTGATGTGGAAAGACTTGATGAAGTCAGGCATGCAGAATGTGAAAGGAGAGGAAAGGCCTAGGGGGCTCCAGTCTGGAGGCCTAAAGTGGGGCCTCTGGGAGGCTAAGCTCCTGTTCTCCCTCTCTCTACTTCTTCCTGCCAG
Seq C2 exon
TTCATCCCGATGCCTGTGCTCTATGGCATCTTCCTGTACATGGGGGTAGCGGCGCTCAGCAGCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018525:ENSRNOT00000025137:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(4.7=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(4.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]