RnoEX0082889 @ rn6
Exon Skipping
Gene
ENSRNOG00000018525 | Slc4a9
Description
solute carrier family 4 member 9 [Source:RGD Symbol;Acc:628811]
Coordinates
chr18:29361039-29365063:+
Coord C1 exon
chr18:29361039-29361111
Coord A exon
chr18:29363529-29363597
Coord C2 exon
chr18:29364908-29365063
Length
69 bp
Sequences
Splice sites
3' ss Seq
TCTCTACTTCTTCCTGCCAGTTC
3' ss Score
9.26
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GGAGCAGAGGTTGACGGGCTTGGTGGTGTTCATCCTTACAGGTGTCTCCATCTTCCTGGCCCCCGTGCTCAAG
Seq A exon
TTCATCCCGATGCCTGTGCTCTATGGCATCTTCCTGTACATGGGGGTAGCGGCGCTCAGCAGCATGCAG
Seq C2 exon
TTACTGGGCCTGGTGGCAGTCCGGAAGGCACTGGAGTGGATCTTTTCACCACAGGAACTCCTCTGGCTGGATGAGCTCATGCCGGAGGAGGAGAAGACCATCCCTGAGAACAGGCCAGAGCCAGAGCACTTGTTCAGTGGAAATGACAGTGAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018525_MULTIEX1-3/6=2-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.308
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(4.7=100)
A:
PF0095516=HCO3_cotransp=FE(4.3=100)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGTCTCCATCTTCCTGGC
R:
GAACAAGTGCTCTGGCTCTGG
Band lengths:
169-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]