BtaEX0033365 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021775 | SLC4A9
Description
Bos taurus solute carrier family 4, sodium bicarbonate cotransporter, member 9 (SLC4A9), mRNA. [Source:RefSeq mRNA;Acc:NM_001192206]
Coordinates
chr7:53251461-53253372:+
Coord C1 exon
chr7:53251461-53251533
Coord A exon
chr7:53252926-53252994
Coord C2 exon
chr7:53253199-53253372
Length
69 bp
Sequences
Splice sites
3' ss Seq
TCTCCAATTCTCTCTACCAGTTC
3' ss Score
8.63
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
AGAGCAGAGGCTGACGGGCCTGGCAGTATTCATCCTCACAGGAATCTCCATCTTCCTGGCACCTATACTCAAG
Seq A exon
TTCATCCCAATGCCTCTTCTCTATGGCATCTTCCTGTACATGGGGGTGACAGCGATTAGCAGCATCCAG
Seq C2 exon
TTCACGAAGAGGGTGCAGCTATTATTGATACCAGCGAAGCACCAGCCAGACCTTCTGTTCTTGCGGCATGTGCCCCTGAGCAGGGTCCACCTGTTCACAGCCATCCAGCTTGCCTGCCTGGGTCTGCTTTGGATAATCAAGTCTACCCCTGCAGCTATCATCTTCCCCATCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021775_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(4.7=100)
A:
PF0095516=HCO3_cotransp=FE(4.3=100)
C2:
PF0095516=HCO3_cotransp=PD(6.6=58.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTGGCAGTATTCATCCTC
R:
AAGCTGGATGGCTGTGAACAG
Band lengths:
168-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development