GgaEX1053628 @ galGal4
Exon Skipping
Gene
ENSGALG00000001045 | SLC4A9
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 9 [Source:HGNC Symbol;Acc:HGNC:11035]
Coordinates
chr13:984905-988422:+
Coord C1 exon
chr13:984905-984977
Coord A exon
chr13:987525-987593
Coord C2 exon
chr13:988249-988422
Length
69 bp
Sequences
Splice sites
3' ss Seq
CTCACCCTGGTGTTTTGCAGTAT
3' ss Score
7.75
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGAGCAGAGGCTGACCGGCCTGGTGGTCTTCATCCTGACTGGAGTCTCTGTCTTCCTGGCACCCATTCTCAAG
Seq A exon
TATATCCCGATGCCAGTGCTGTATGGGGTCTTTCTGCATATGGGAGTGGCAGCTCTGAACAGCATCCAG
Seq C2 exon
CTCACAGATCGAGTGCGGCTGCTTCTGATGCCTGCAAAACACCAGCCAGATCACCTCTATCTCCGCCATGTGCCACTGTGCCGGGTGCACCTCTTCACCTTCATCCAGCTGCTGTGCCTGGCCATGCTCTGGGTCATCAAGTCTACCGCGGCTGCCATTGTTTTCCCAGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001045-'20-27,'20-26,23-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(5.2=100)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSGALT00000001559fB12113
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCTTCCTGGCACCCATTC
R:
GCGGTAGACTTGATGACCCAG
Band lengths:
175-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]