GgaEX1053628 @ galGal3
Exon Skipping
Gene
ENSGALG00000001045 | SLC4A9
Description
NA
Coordinates
chr13:1437204-1441102:+
Coord C1 exon
chr13:1437204-1437276
Coord A exon
chr13:1440205-1440273
Coord C2 exon
chr13:1440929-1441102
Length
69 bp
Sequences
Splice sites
3' ss Seq
CTCACCCTGGTGTTTTGCAGTAT
3' ss Score
7.75
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGAGCAGAGGCTGACCGGCCTGGTGGTCTTCATCCTGACTGGAGTCTCTGTCTTCCTGGCACCCATTCTCAAG
Seq A exon
TATATCCCGATGCCAGTGCTGTATGGGGTCTTTCTGCATATGGGAGTGGCAGCTCTGAACAGCATCCAG
Seq C2 exon
CTCACAGATCGAGTGCGGCTGCTTCTGATGCCTGCAAAACACCAGCCAGATCACCTCTATCTCCGCCATGTGCCACTGTGCCGGGTGCACCTCTTCACCTTCATCCAGCTGCTGTGCCTGGCCATGCTCTGGGTCATCAAGTCTACCGCGGCTGCCATTGTTTTCCCAGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001045-'16-20,'16-19,17-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(4.6=100)
A:
PF0095516=HCO3_cotransp=FE(4.2=100)
C2:
PF0095516=HCO3_cotransp=PD(6.5=58.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCTTCCTGGCACCCATTC
R:
GCGGTAGACTTGATGACCCAG
Band lengths:
175-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]