HsaEX6100182 @ hg38
Exon Skipping
Gene
ENSG00000113073 | SLC4A9
Description
solute carrier family 4 member 9 [Source:HGNC Symbol;Acc:HGNC:11035]
Coordinates
chr5:140368587-140371624:+
Coord C1 exon
chr5:140368587-140368659
Coord A exon
chr5:140371095-140371163
Coord C2 exon
chr5:140371451-140371624
Length
69 bp
Sequences
Splice sites
3' ss Seq
TCTCTGCTTCTTTCTACCAGTTC
3' ss Score
9.5
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GGAACAGAGGCTGACAGGCCTGGTGGTGTTCATCCTTACAGGAGCCTCCATCTTCCTGGCACCTGTGCTCAAG
Seq A exon
TTCATTCCAATGCCTGTGCTCTATGGCATCTTCCTGTATATGGGGGTGGCAGCGCTCAGCAGCATTCAG
Seq C2 exon
TTCACTAATAGGGTGAAGCTGTTGTTGATGCCAGCAAAACACCAGCCAGACCTGCTACTCTTGCGGCATGTGCCTCTGACCAGGGTCCACCTCTTCACAGCCATCCAGCTTGCCTGTCTGGGGCTGCTTTGGATAATCAAGTCTACCCCTGCAGCCATCATCTTCCCCCTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000113073-'22-28,'22-25,23-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(4.8=100)
A:
PF0095516=HCO3_cotransp=FE(4.4=100)
C2:
PF0095516=HCO3_cotransp=PD(13.9=58.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGAGCCTCCATCTTCCTG
R:
TATCCAAAGCAGCCCCAGACA
Band lengths:
171-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains