RnoINT0141910 @ rn6
Intron Retention
Gene
ENSRNOG00000005943 | Sp8
Description
Sp8 transcription factor [Source:RGD Symbol;Acc:1307619]
Coordinates
chr6:146784915-146787518:+
Coord C1 exon
chr6:146784915-146784935
Coord A exon
chr6:146784936-146785974
Coord C2 exon
chr6:146785975-146787518
Length
1039 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
CTCCTCCGCTCCGGTCTCAGGAA
3' ss Score
9.14
Exon sequences
Seq C1 exon
ATGGCAACTTCACTTCTAGGG
Seq A exon
GTGAGTCTCAGGATCTTCTCTTGCTGGTTTAATTAGTTTCCTTTTATTGCCTATCGGAGGGGGTTAAAGTCGCCCGGCCAGGCCACGGGCTATCAGTCTCTCTATTGAGAGCCACCCCCCCCTCCCTTAAATACAAGTGAGTTTAGAAAAAAGAAAGAGTTGGGGGGGTGGGGAGAGGAGGCAGAGCCACTTTTTTTTCAGCACTGGAAAGGTTCGTAGGGCATTGAGACCCGCCACCTCGCAGAGCCCGGCCGCTCCCTGCTCGGGAGAACTGAGCGTAGCCCCTAATATACGCGACGATTTCGAAGGGGACCGCGAGTAAGTTTTTCCCTCCTGGGCATACTGCAGATTCTCCCCCTTTCCTTCCCCTTAATATTTTTCCTCAGCCCGCTTTGTATTGCAGGTACGTTGAGCTCGTTTTATTTCTACCATTATAGATAGATATAATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACTAAAAGAAAAAAATGGAAGAGCGAGTAAGCCTTAGGCCAGGGAGAAGAAACTAAGGATGGGTTGAGGGGCATCGGAACAGAATTTTCAAAGCTCTCTCGGGATTGCAGGGTAGCAATCTTAAATGTAATCCAGAGATTTCTCCAGGTTGTAAGGTAAAAGGAAACTTCTCCCTCCCTAGTCTGGATCTGGACTTTCTGTTCGTTTGGTCGAAAGCTTCTAGGGCTTTGTGAACACAAGAGTGCCGTCTTAAGTGAGAATTCTTGTTAAACTCTTCTTTAGCTTGGCGTTTTGCACCGGAATCAGACGCCCGCAGCCAAACTTGTCCCCTCCTGTAGAGTAGGAGGCTGACGGGCTCCGGGGCAGCTGGGGGTGCAGGGTAAGTTGGTGGCAGAGTGCCGCAGTGAGAGATGGGCAGCAGTGGGGCGTCTGAAGGCTACCAGGAGACTAATGCACATTTCTTTCCTCCCTCCCCCACCGGCCCTTTGCCCACCACCCCTCCCCCACCCTTCTCCTCCGCTCCGGTCTCAG
Seq C2 exon
GAAGAACCGAGGTTGGGATCCACTCCTCTGGCCATGCTTGCTGCTACCTGTAATAAGATCGGCAGCCCCAGCCCGTCTCCCTCCTCCCTGTCGGACAGCTCTTCTTCTTTCAGTAAAGGCTTCCACCCTTGGAAACGCTCCTCATCTTCCTCCTCCGGCAGCTGCAACGTAGTGGGTTCCAGTCTCTCTAGCTTCGGCGTGTCGGGGGCCTCTCGGAACGGCGGTTCGTCCTCCGCCGCAGCGGCGGCGGCGGCGGCCGCGGCGGCGGCGGCGGCCCTGGTGTCCGACTCGTTTAGCTGCGGAGGCTCGCCCGGCTCCAGCGCCTTCTCTCTCACCTCCAGCAGCGCCGCCGCAGCGGCCGCAGCTGCCGCGGCCGCCGCTTCCAGCTCGCCCTTTGCCAACGACTACTCTGTGTTCCAGGCCCCGGGCGTCTCAGGGGGCAGCGGCGGCGGCGGCGGGGGAGGCGGCGGCGGTTCCGGAGCGCACTCGCAGGACAGCTCCCATCAGCCGGTGTTCATCTCCAAGGTGCACACGTCGGTGGACGGACTGCAAGGCATCTACCCGCGCGTGGGAATGGCGCACCCGTATGAGTCGTGGTTCAAGCCCTCGCACCCGGGCCTTGGTGCCGCGGCCGACGTGGGCTCCGCGGGCGCCTCCAGCTGGTGGGATGTGGGCGCGGGCTGGATCGACGTGCAGAACCCCAATGGGGCAGCAGCGCTGCCCGGCTCTCTGCACCCGGCCGCCGGGGGCCTCCAGACGTCGCTGCACTCACCGCTGGGAGGCTACAACTCGGATTACTCCGGCCTGAGCCACTCGGCCTTCAGTAGTGGTGCCTCGTCGCACCTGCTCAGCCCTGCAGGACAGCACCTCATGGACGGTTTCAAGCCCGTATTGCCCGGCTCGTACCCGGATTCCGCCCCTTCGCCGCTGGCCGGCGCGGGCAGCTCTATGCTGAGCGCGGGGCCCGCGGCGCCCTTAGGGGGGTCTCCACGCTCTTCTGCGCGCCGCTACTCCGGCCGCGCCACCTGCGACTGCCCCAACTGCCAGGAGGCTGAGCGTCTGGGCCCAGCGGGAGCGAGCCTGCGTCGCAAAGGGCTGCATAGCTGCCACATCCCAGGCTGCGGCAAGGTGTACGGCAAGACGTCGCACCTGAAGGCGCACCTGCGCTGGCATACCGGCGAGCGGCCGTTCGTGTGCAATTGGCTGTTCTGCGGTAAGCGCTTTACGCGCTCCGACGAGCTGCAGCGGCACCTGCGGACCCACACGGGCGAGAAGCGCTTCGCCTGCCCGGTGTGCAACAAACGCTTCATGCGCAGCGACCACCTGAGCAAGCACGTGAAGACACACAGCGGTGGCGGCGGCTCGGCGGGCTCCGGTGGCGGCAAGAAGGGCAGCGACACCGACAGCGAGCACAGCGCGGCGGGAAGCCCGCCTTGCCACTCCCCTGAGCTTCTGCAGCCTCCAGAGCCCGGCCACCGCAATGGCCTGGAGTGACTGTCGCAATGCCTCCCACCTGAGTCCCGTCGGGCTTGTGTGCCTGGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005943:ENSRNOT00000008362:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.857 A=NA C2=0.300
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=4.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCAACTTCACTTCTAGGG
R:
TGAGAGAGAAGGCGCTGGAG
Band lengths:
355-1394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]