RnoINT0149333 @ rn6
Intron Retention
Gene
ENSRNOG00000031126 | Tecta
Description
tectorin alpha [Source:RGD Symbol;Acc:1309824]
Coordinates
chr8:46625988-46633924:-
Coord C1 exon
chr8:46633363-46633924
Coord A exon
chr8:46626188-46633362
Coord C2 exon
chr8:46625988-46626187
Length
7175 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
AGTCGTCCCTTCTGTTCCAGCGG
3' ss Score
8.85
Exon sequences
Seq C1 exon
GTCAACAATGAACGGTTGTACCTGCCCCTGAAGTTAGGACAAGGGAAGATCAACATCTTTTCCTTCGGTTTTCATGTGGTTGTGGAGACGGACTTTGGCCTGAAGGTTGTGTATGACTGGAAAACTTTCCTGTCTATCACCGTCCCCCGGAGCATGCAGAACAGCACTTACGGTCTTTGTGGGCGCTACAATGGTAACCCTGGTGATGACCTGGAGATGCCCATGGGCTTGCTTGCACTGAGTATCAATGAGTTTGGCCAGAGCTGGGTGAAGAGGGACACCTTCTGCCAGGTGGGCTGTGGGGACCGCTGCCCATCGTGTGCCAAAGTTGAAGGTTTCTCCAAAGTACAGCAGCTGTGCAGCCTGATCCCCAACCAGAACGCTGGGTTTGCCAAGTGTCACAGCAAAGTCAACCCTACCTTCTTCTACAAAAACTGCCTCTTTGACTCCTGCATCGATGGGGGTGCAGTGCAGACAGCCTGCAGCTGGTTACAGAACTATGCCAGCACTTGCCAGACACAAGGAGTCGCAGTGACCGGCTGGAGGAACTACACATCGTGCT
Seq A exon
GTGAGTCCTATCTCTCTTTCTTCCTCCTCCTTGTTTCTGATGGGTGTGTGGGAGGCTGGTCCTCCAACTCCATAGATGTGATGGCAATTGGGAAGACAGACTTCAGGATATGCACTCTGGAACTCATCCCCGATACCCGAAACAGAAGGTGTAACCTCTACGGTCTCCTTTCTTTATTTGTAGAGAGGGCTCGACACCACGGATTTGATGGGTTACCCTGGAGGATGGAATGAGTTCACTTATCTGAAGCACAGAATATCACGTGCTGCCTTTGAATTCCGAATACACAATAAAACCCTTCCCAGAGGCTCACGGGAAAAGCCAGTGGTTCTCAACCTTCCTAATGCTGTAACCCTTTAATATGATTCCTCGTGTTGTGGTGACCCCAATCATAAAATTCTTTTCATTGCTACTTCATAACTGCAATTTTGTTAGTATTGTGAATTGCAATGGAAATATCTGATATTCAGGATATGTAATATGTGAACCCTGTGAAAGGGTCATTTAATCCACAAAGGGGTCGAAACTCACAGGTTGAGAAACACTGCTCTTGAACCTCATGGGTCTATGATCTTATATATATATATAATTTATGTATACAAATAATATCATATTATATATAAATATTTATAATATAAAATATTTATATATAATTTATATATTATAAATTCTAATATTACATATTCATATAATTTAAATATATATGAAATATATTAGTCTTTGTGCCTGTAGTACATGGCAGAATATTTAAAGCTTTAGAAAGGAGAGTTCAGTTCGTGGATTCGAGCCTCAACTTGGTGATTAAAAGGATCAATGAACTACCTCACTTCCCCTTTCTGGTTCTCAGCTTATTCTCTGAAGAGCAGCCACAATGCTGCTTGAACCATTTATGTGCAGAAACACTGGAAGGGTCAGATTAGATCATTGGAATCCTGGCACACAATGCATCGTAGGTGGTGGTATTACATTAATGACTTGCTGTGATTAAACCCACTGCTAAAACACCCTATCGGCATTATTCCATCACTTCTTTACAGTAACCCTACTAGACAAGGGAAAGTGAAATGTAGAGGAATTAAGTATCTTGACTGAGCTTTAATAATCTCAATGGCAGGGGCAGGGTTTGACTCTTAGGCCAACACCATGCCCCGCACTAGTGGACCACAGGAGAGTTAGCTAGAGCGTGCGGCGGCATTCACATGTGTACATCGGAAAAACTGGTGGTGAAATAAATCACCGTGAGTCTTTAGTTAACCTGCCAGGACCTATTTTCCTACCCCAGTCTCATTAACTATAGCACGTTTCTTTGTATAAAAGGTCTGATTATACAGAATGGCTACAAATTAATGCCGGGTGCTCAGAGCTTTAAATAAGGGGGCAGCAGGTCCCACGAAGAACAAGCTCTCATTTTCATCCTGGAAAGGGGGAGATTTGGGTGCAGAGCTGTTGTGCTTTAATGATTAGTTGGTCTGCATTCCACCCACAGCCATTGGATTCAAGGAAACTGGGGTGGGCAGAGGAGGGAGGGGAAGAGTCCAAGATTATATCATACAAGTTCAGTTCTTGAGTAAAGGAGGTGGGGGACGAGATGTCTGTGGATGACAGTCTAGAACAATCTACTATCCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCACGCGCGAGAGCGCGTGTCTATAAAAAGTCTGGGGCCGGAGCAATGTCCAGGTCTCCTGGGGATTTACTGGAGTCAGCACAGCGGGATTGGTGTGCTTGATTTCCTCTAAATCAGAACACAGGCTCTTGGCAGAGAGACCTTAGCATGGCACAGGATCAGAAAGCGTGTTTGGGACGGGAGCTGAGCCTGGTTCTTCTTGAGGTTTGTCACAGGGAGCTCCCTCTCCCTCTCCCTCTCTCTCTCCCTCTCCCTCTCCTACATGGAAGGATACAACCACCTTTAACTCCAGTTCTAGGGGATCGATGCCCTCTTATGGCCTCCACAGGCTCTGTGTACCACAGGTACACTGCTTACATACATGTAGGTGAAACGCCCATTCATCTGTGCAAAATACAATACAAATAAACGAATACATACAAATAAATAAATCTTTTAAAGTTATAATGTAAAAAAATACTAATTGCTAAACTCCATGAACATTTATACAACACATAGTTCACATTTTCAAAGTAAACATGCTTTCTGGATTTGCACTAAAGTAAAGGGAAACCTGCCTGTGGCAGACTTCATCTGAGGAATGTGACCATTTAGTCACCACTAAAGGTGATGTGAATTGCTTATCACGTGCTTGCTTTTAGTCATTGGTGACATTGGTGAAGGGTAGAAGAAACAGCAAGCACAAGGCTTGGTTTGTAAGGCAGACTGTGCATAGTATCCAACATAGACTATCTTCTCAGGACACTCAAGAGCTACTACTGAGACTCTACTCATAGGCCAGCTACCAGTTGGCTTTACTCTATGATGATGGTGATGGGAGAATCCACATGCTGCCTGCCTCAGAGGGTTAGGATAGGAGGTAACTAGGTGTCAACTCCCTTGTGTTCTTCCTTACACGGCTGCTTTGGGTTAGGTGTACACTTGAGCTAAATACATCCACGTTCCTATTAGGAACTCTGAGCATCCAGCTCCTCTGGCCCCACCCCTAGCCCATGCCTAGCAATGTCAGCCTCCACATCCTTTGCTATTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAGGGGAGGGGAGGGGAAGGTAGGTTAGGGGAGGGGATGGGGGATGAGGAGAAGAAAGGGAGGGATGAATTAGCAGCTTCAAACTATCTCATTATGGAAGCTTACAAACTTCTCATGGGAAGAGAGCTGCAGCATCACCCCCACTTTATGGGGGAAAACATGAGTTCAGAGAGCATAAGGAGCCTGTGCAAGGTGACCCTGCCAGTTAATGACAGAGCCAGGCTTCATAGCCAGGTCAGTCTGACTCTAGAGGGCTTGTCCATTCCACTCCATTGCTTTTCAGGGGTTCTGTGTGCCCTGCAGTGCACATAGGCACGATTTTAAATAAGTCTCCTGGCCTCGACAAGAGCAATGCTCTTGACCACAATACACTCAAGCAGTCATCACTCTCCAGCCTCTGAGGCTGGAGAATTTAGAGGGTGAGAGAAGTAATAAATCAGTATTTAAAATGGGAAATTTTAAAATATTGACCACCGGGTATCTATTGGTCACCTACCATGTTGTCAGTGTTGTTTGGATGCCAGAGAAGAATCCAAAGTCTTAAATATGGAGAAAGAGAAATGAGTGTCTTCTCAGATATGAAAATGACGATGTTTTACTATTAATGCTTTATATTAATAGTATTAATTAACTAATACTCAGTATTAATAGCCTTGCGGGAGCAAGTGAGCTAGCACAAGTTAACAAGAACATCACACAATGATGGGAGGGCACATACTGATGTCTGAGCATGTCAGCAAAAGCCTGACCATCTAACCCGGTGGTTCTCGCCCTCTGGGTCGCGACCCCCTGGGGTCACATATTAGATGCTCTGCCTATCAGACACTAACATTGTGATTCATCGCAGCAGCAAAATTACAGTCATAAAGTTGCAACAAAATAATTTTATGGTTTTTGTGGTCACCACAATGTGAGGAACTGTATTAAAGGGTTGCAGCATTAGGAAGGTTGAGAACCGCAGATCCTGACCATTAGAAATCAGTTTGTAGTCAACCTGGTTTCGAATAACTTGAGGAAAAGGAAGATCCATGTAATGAATAGTGAAGAGATGTTAGGAAAGTTCTCTGGGGAAAAGGTAAGAGTTTAGTCTTTTCTTCATTTCAGGTGCAAAATAAAATCCAGACTGAGTAAAGATTAAACATTTAAAAATTGAATTACAAAAGTACTAGTATAAAACAAAGGAGTTTGCCTCCCCCTGCCCCCGCCATCACACATCAAAGCTATTAAGGAAAGCTAGATAAATTTGACCTCATAAATTTGACCTCATAAAATTTTTACGTCTCTACAGTACAAAAACTCTACATGGCAAAAACATAATTTTTAAAAACTACAAATTTTCAAAAGAAGAAGCAAAGTCAGAGACAAACAATGAATATTTTATGATACATGTGACACACAAAAAGCGCGTCTTTAATTTAAAAAAAGCACTTGCAGTCTAGTAAGAAGAAACTCCAACAACACAGGGTGTAGCAGATGAGAAAAGTCAGTGCGCAGGGGACATAAAAATGACTATAAACAAATTCGGTGGTAGCCAGGCTCAGAGGGATGCAAACCAAATACACACACAGCAGAGAGAGAGGGGGTTTTCTCTTTTATTTTCCACGTTTCCAGAAATCAGAAATCTCAGGCTGTCACCATCGAAACTTCAGGAGGTCAAATCATTTTTGTTCCTTGGCATAACCTCTTCTCTTACAAGGCAGCTCAGTGGGTTCTGCCAAAGACCCGGGGTCTGGAAGCTTAGCTCAGCGGCAGGGTGAGGCCTTGGGTTGGAGCTCCAGCACTGCAGTAATAGTAGTGTTGGTAGATGATGATGATGATGGTGGTGGTGGTGGTGATGGTGGTGATGATGGTGATGATGGTGGTGGTGGTGGTGGTGATGATGATGATGGTGGTGATGGTGATGGTGGTGATGATGGTGGTGGTGATGGTGATGATGATGATGGTGGTGGTGGTGGTGGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATCTATTCTTTAGATTAAAAATTCCACTTCTAGGAAGTTATTCTACAGCCTAACTAATGAGGAAAAAAAATACATGCCGTGGGAGTCATACAAAAGACACATACCACGAAGTGGTGTAAAGACAAGAGTTCAAGACTGAATGGGTGAAATATTGTCAGGAAAAAGCATGGGAAGGTTTGGCAAGGTATGGCATGGTTTATAGACTATGCTCACATCCATGTGAAAGACCAGAGCTGTGGATCACACACACACAGAGACACACACACACACACAGAGACACACACACACGTCTATGTGTGTAGACAATTTGTGCAAGAATCCACTGGAATTTAATAGTTATCGCAGGCCATGTGTATTTTCTATGACCTGAGGACTTTATCTTTTGAACTATACTTTAAAATATATATATATAAAACATACTGTGGTAGTGCCTCTGTAAACATGCCCATGTACTAAAATTCTCAGGACTATGCACTCTGCAAGTTCCTATTTACTGCTGGGTGAAAGATAATCCCCCAAACCCTCCATGTACTGTAGAGACATCCCCACATGCATGGTTGCTGTGCGTTTAGCATTCATTGACTAAGAGAGCAGCTGATATAAAACTCTCAAGCAAGACTTGCATTAATGCTGGGTTAATACTGAACGCTTCGGGCACAGAGCTCTCCTAAGCACGCAAATCCCTGTGCTGTTGGTGTCCGCATTACGTACACAAAGAAGTTGAGACTCGGCCCCTAAATACCCTGCCTGCATTTCATACCAGAGCTCAGCACTATTGACCAATGTGTTACCTGCCTTCCCTAGACACAGTTTCAGATGCATCTCAGGACATAGAACACACTGATTCTGGTCAAGCCGCCCACGCGCACACACAGGCACACACGAGTACACATTTTCAGAGATCACGTGGCTCAGGGGTCTCTTGTCAATAAATTACTGGTTTAGACTAAAGGATCTGTGGAGGTTGGGAGGGGAGGGTGAGTGACATTCGGTAATAGGGGGAGGGCACTATCTCATGATTCTCCAAGTGTGATGGAGGGAGAGAACCAGGAGTTTGGGTAAGCAAGATGAGAAGAAGGGTATTGATGTGAATGAAGTCTGAGAGGCTGGGCTGGTGTGCAGGCCTTGTCTAGCCCAAGTTTGGATTCCTCTTGGCCATTGAGTAGCAGAAGCCAGCACTAAAGCAAGGACAGATTATGTGAGAAGACTCCAGCCCCTTCCGTCTGCACACACTGGTCTGTCCTTTAAGGAAAAAGGAGTCAGGCAGGGGCTTTTCATAAGCAAAGAGCATGGGTGAGGGAAAGTGGCCAGCCTCACACCTCTTCCCTCACCCCATGCCCTCGACCTCCCTGAGCAAGGCTGTGAGAAAGCCATTTACAGCTCCTTGTGACTTGAGTCGTCCCTTCTGTTCCAG
Seq C2 exon
CGGTCACCTGCCCCCCCAACAGCCACTACGAGAGTTGCGTGAGCGTCTGCCAGCCTCGCTGCGCTGCCATCCGCCTGAAGAGTGACTGCAATCACTACTGCGTAGAGGGCTGCCAGTGCGACGCGGGCTACGTCCTCAACGGCAAGAGCTGCATCTTGCCCCACAACTGTGGCTGCTACTCGGACGGCAAATACTACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031126:ENSRNOT00000052293:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(47.8=40.4),PF087426=C8=WD(100=40.4)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=80.6),PF127142=TILa=PU(16.4=13.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]