RnoINT0151397 @ rn6
Intron Retention
Gene
ENSRNOG00000006285 | Tlk2
Description
tousled-like kinase 2 [Source:RGD Symbol;Acc:1310907]
Coordinates
chr10:93471309-93473335:+
Coord C1 exon
chr10:93471309-93471445
Coord A exon
chr10:93471446-93473182
Coord C2 exon
chr10:93473183-93473335
Length
1737 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
CATATTCTTTATATTTCTAGGCA
3' ss Score
7.65
Exon sequences
Seq C1 exon
TCAAAACAAGAGAAGATGGCATGCAGGGACAAGAGCATGCAGGACCGATTGCGATTAGGTCACTTTACAACTGTCCGGCATGGAGCCTCTTTTACTGAACAGTGGACAGATGGTTATGCTTTCCAAAACCTCATCAA
Seq A exon
GTAAGTCAACTGTCAGGATTAAGTAGGGGAACTTTAATGTATTTGGATTTTTATTTTAAAGTTTTCTGTAATTACAGTCAGTAAAAAAAATGTAGGATTACCAGGCAGTAGTCACTCATGCCTTTAATCCCAGCATTCAGGGACTGATGCAGATAGGCAGATCTCTAGTTCGAAGCCAGTCTGGGCTACAAAGCAAATTCAGTTCAGCCCAGCTTACATGATGAAAACCCCTATCTCAAAAACAAAAGAGACAAACTCTGGGTGGGTAGGTCTGTCTATCTGTCTCTGTGTTTGTGTGTCTGTCTGTCTGTCTGTCTGTGTATATCTTGAGTTGTATATCTGATGCTACCTTCATCTAAGACAGGAAGATACATGGAGGCATTATATTTTTATACTATTAATTTGCTTATTTCTTAAACTGAGAATTGCAACTAGGACCTCATGCCTGCTGGGCAAGCACTCTACCATTGAGCTGAGTTAGCTGCATTTTAATCAGGACACACTCTGACTTTTGACCTCCAGATCACAGCTAGGACTTAGATTCTCTTTTCCATTTTTCTTTGTTGAAATAGGTTTGTTTAATATGAATTGGAGAGCATGTTATTATTTTAGAGTGACAATGACCCATAAAAGATTGGGTCCTGAAAGAAAAGTACAAATACAGATGCTATGTGTAGTAAACACATATGAAGCATCAACTTCAAGCTTAGTTGAAAAGTTATTTTGCTTTGCAAATGTACCAGTATGTGGTGTGGGGCTGGTGGGTTGGTTGGTGGGTTGGTTTGGTTTTGTTTTGTCTTTTAAAGGCTGTTAAATCAGAGATATCCTGAAAGTTAAGCAGAGTAGCATCTTCTCTATGAGTGAGGCATACCTGTAGCTGAAGTGTACTAAGGCTGTCATACCAAGGCATGCCATCCCATGACACCTTGACCAAGAAGTGCGATTGCCCGTTCTATGTTCATAAGTGTAGAGTCAGTATTGCTACTCAAATCTCCATTATATAGTCTCAGCTATATAATGTGCTCAGACTGAATCTAAAGTAGGATAATTGCCACCTAAGATTTATAATGAGATTGTCTCTCTAAAAAAAATCTGTTGTCTGCTGGGCCGTGGTGGCGCATTCAACTTTAATCCCAACGCTTGGGAGGGAGAGGCAGGTGGGTATCTGTGAATTCAAGGCCAGCCTGGTCTACAGAGCAAGTTCCAGGCAGCCAGGGCTACACAGAGAAACTCTGTATGAATTTTTACAAAAAAGAAACAGAAAAAAAAAAAAAAGAAACTTCTTAGCCGAACTCCAGTGCACTGGGCCACCATACTGTACATGTACAGCTTCAGCATTGTGTTGTATGGTAATAGAGTTAAGATTGCAAGGCACTCGGGACTTCTGATAGGGTGGTCATTTCAGTCCAACTTTTCCTAATTGAATGCAGACTTTATCTTCTTAGCTATTAAAGGGGAATCTGAAAATTGTTCCATTAAAGTCTGTAAGGTCGTAGCAAATATTTATCCACTTTCCCTCACCTTTCAGCCATAACTGGTTCCTTAAAGTACAGACTTTTTCCCAAAGCACCCCCACGGGTTATAGGCTCCTGCACCCTGAAGGCTAAAGCACAATCTCCGTCCCAGGAAGCAAGCTTAGCACTCTGAAGGCTGTCATGCACGCGGGGAAGTCGTTCGCATGCATGCCACAGCAGTGGAATTTACTTACCTTCTGTGCCATATTCTTTATATTTCTAG
Seq C2 exon
GCAACAGGAAAGGATAAATTCACAGAGAGAAGAGATAGAAAGGCAACGGAAAATGTTAGCAAAACGGAAACCCCCTGCCATGGGTCAGGCCCCTCCCGCAACCAATGAGCAGAAACAACGGAAAAGCAAGACCAATGGAGCTGAAAATGAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006285:ENSRNOT00000066484:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.435 A=NA C2=0.962
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAAACAAGAGAAGATGGCATGC
R:
CATTTTCAGCTCCATTGGTCTTGC
Band lengths:
286-2023
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]