RnoINT0153394 @ rn6
Intron Retention
Gene
ENSRNOG00000001165 | Tmprss3
Description
transmembrane serine protease 3 [Source:RGD Symbol;Acc:1310135]
Coordinates
chr20:9918013-9920237:-
Coord C1 exon
chr20:9920068-9920237
Coord A exon
chr20:9918109-9920067
Coord C2 exon
chr20:9918013-9918108
Length
1959 bp
Sequences
Splice sites
5' ss Seq
ACGGTACGT
5' ss Score
11.34
3' ss Seq
CATTGTGCTCCTTCTAACAGAGA
3' ss Score
9.49
Exon sequences
Seq C1 exon
CCTGTACCACCCCAAGTCCTGGACTGTCCAGGTGGGTCTCGTGTCCCTGATGGACAGTCCTGTGCCCTCCCACCTGGTGGAGAAAATCATCTACCACAGCAAGTACAAACCAAAGCGACTGGGCAATGACATCGCCCTCATGAAGCTGTCCGAGCCACTCACCTTTGACG
Seq A exon
GTACGTTCAGGCCTCCGTGCCGGGCATTTGCTTCTAGCTTGTTTCAAGACCTTGCCTGTTGAAGCATTGCTATAATGGCTGTTTTCCCGTCCCTTGCTTGGAAATTTCAAAATCTGATTCAGCTGGGTGCCAACATGGTGCATTGCATTTGCTCATTAAAGGTGTGCATGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGCATGTGTGTGTGTGTGCATGTGTCTGAGAGTTTGAGTGCGCGTGCAAGCACATGCACATACGTGCACATATGTATGCATGCACATAGCAGTCAGAGGTCAATCTTGAATGTCATTCCTTAGGGACCATCCACCACCTGTTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGTGCGGGCAGGGCTCAGGGGCTCTTCCTGATCTAGAGTTTCCTAATAGTCTAACTGGCCAAGAACCAGAGTCGCTCCAGGGACCTTTCTGTCCCTACCTCCTCAGGACTGGGTAACAGACTCAATGCCACTCCAGCTGGCCTTTTACATGGGTGTCATGGGCCAAGCTCAGGTGTTCATGCTTGTGCAGGCGTTCACTTCGCCAGCCGAGCCACCTGCCTGAGTTAGGTGTTTTCAATCTGAGCATGTTAGGAGACGGAGCCCTTGCTCAAGATTTCAGCCTGATTTCTTCAGACTTGGCTTATCGATCTTGGCTGTCCCTCTAGTGCCAATTTAATCTCACAGCCTCCCAGTTCTGCTCTGGTTTCCTTCTGGTGCCAGCTACAGATAGAACTCCAGGCCAGTAGGCCAGGCCACCTGGTGCCTCTAGGTGGTGGAAGAGAGTCGCCTGTCCTCAGGGACCCAGAGTCGAGAGCATTTTGCTGTCCTGGCTTTTGCTGCTTGGAGCCTCTTGTAGGGGATCCCCCGTGGAAAGAGTAGAGTCCCAAGCAGGGGTAGCTTGAAGACTTGCAAAGAACCTGCCTCTTTCTTTCCATCTGGAAGGTTCTAGGCATCCTCAGCTCCCTGGGCATTCTAGAGCCGACCTCTCTCTCCTCTCCTCTCCTATTCTTATCTGTGAGTTCCAAGCTCAGCCCTCTGACCATTAATAGAGCCCTGCTAGAACTCTCAAAATTCACAAAATGCAAAACAGGAGGAATGGTGGCTTAAATAAAACTCCTGACCATCCCAAGGATAAGCACCCTGGAGGGCAGGAAGGGCCGCTTCCAAGGTAGACTCTCATTCTCGGCAGCAAATCTATGTGATTTCAAGAGAAACTGAGAGAAAAGCTGCTTGGGTTGGGTGGGGGCTGCCGGCGATATTTGATTCTAGAAAAGGAAGTGTCCACAGTGTACTTGGCTAAAGAGTTAAATAGTTCATAGTTAAATATGTCTCTACCCTTCTCCAGTTTTTCGTTATCAGAATGAGGAAAGGGGGGGAGGGGTGCTTCTCAAGTGCTGCTCCCATGGAAGCCCTGGGCATACGCAGCTGCTTGGCTTTGCTAGGGCATCAGTGGCACAGCCTAGATACAGACTGGCTGTCACCACAAACACCAGAGGCAGCGGTGTGATGTTCTGTGAAACCCAGTAAAGACTTAAGTCTGGTCCAGGAGTGATCAACTGTGTGGCTCACGGGCCACCGGTGAACCAATGTACATTTGAGCAAGTAAAAATCTTGTCATAAATCCACCAGTCACCCTTTCTGTATGTCTCCTGTGGTTCTAGCAACTGTGGAGTGAGGTTCACATAGGCTACAAGCTGGAACTGTCTACTGTCCAACTGTCTGACTTTTGACAGCTGTGTTTTGTTGCTGGGCTCTGGATTCATGCCACAGTCTAGGGCCATAGTTGGGAGATGAGTGGACATGTCAACCGCTCTCTGGGGGGGTGGGGGGGGCTCAGAGACCTGAACATAAAGTCATTTGATTTCTGGGACAGTGGCTTCAGGGACCTCACCTCATTGTGCTCCTTCTAACAG
Seq C2 exon
AGACCATCCAGCCCATCTGCCTGCCCAACTCTGAAGAGAACTTTCCAGACGGGAAATTGTGCTGGACCTCAGGATGGGGAGCCACAGAGGACGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001165:ENSRNOT00000001540:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(25.1=100)
A:
NA
C2:
PF0008921=Trypsin=FE(14.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTACCACCCCAAGTCCTG
R:
GTCCTCTGTGGCTCCCCATC
Band lengths:
262-2221
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]