MmuINT1033421 @ mm10
Intron Retention
Gene
ENSMUSG00000024034 | Tmprss3
Description
transmembrane protease, serine 3 [Source:MGI Symbol;Acc:MGI:2155445]
Coordinates
chr17:31186503-31188469:-
Coord C1 exon
chr17:31188300-31188469
Coord A exon
chr17:31186599-31188299
Coord C2 exon
chr17:31186503-31186598
Length
1701 bp
Sequences
Splice sites
5' ss Seq
ACGGTACAA
5' ss Score
4.76
3' ss Seq
CATTGTGCCCCTTCTAACAGAGA
3' ss Score
8.73
Exon sequences
Seq C1 exon
CCTGTACCACCCCAAGTCCTGGACTGTCCAGGTGGGTCTTGTGTCCCTGATGGACAGTCCTGTGCCCTCCCATCTGGTGGAGAAAATCATCTATCACAGCAAGTACAAGCCAAAGCGGCTGGGCAATGACATAGCCCTCATGAAGCTGTCCGAGCCACTCACCTTTGACG
Seq A exon
GTACAAACGTTTAGGCCTCTGCCCTGCACTTGCTTTTAGCTTGTTTCAAGAGCTTGCCTGTCGAGGCACTGTTATACTGTCTGCTTTACTATCCTTGCATGGAAATTCCAAAATCTGATTCAGCTAGGTGTTGATGTAGGTGCATAGCATTTGCTCGTTAAAGGTGTGTGTTCGAGAGCACACATGTGCACATGCATGTGCATGCACAAATGTATGCATGCACATAGGGGGCCAGAAAGTCATTCTTGAATGTTGTTCCTTTGGAAGCAGCACCTTGCTTTTTTGGGGGATTCAGTCTCTTATTGATCTAGACTTGCCTAATAGACTGACTGACCAAGAAGCCCCAGGGACCCTTCTGTCTCTGTCTCTGCCTCCTCAGTACTGGGTAACACCCTCAATGCCACTACAGCTGCCTTTTTACATGGGTGGCCCAGATCAAACTCAGCAGTTCATGATTGTGCAGCAAGCACTTAGCCAGCACAGCTACCTTCCCAGCCCGAATTAGGTGTTTTCAGTGTGAGCATGTTAGGAGACGGAGCCCTTGCTTAAGATTTCAGCCTGTTACGTTTTTTAGACTTAGGTTGTCGACCTTGGCTGTCCCTCTAGTGCCAATTCAACCTCACAGCCTTCCAGTTCTGCTCTGTTCTCTCTGCCCTGTGCCAGCTGCAGATGGCTACCTGATGCCTCTAGGTGGCAGAAGAGAGCCGCCTGTCCTCAGGGACCCAGAGCACTTTGCTGTCCTGGTTTTTGCTGCTTGCAGCCTCTCCAGTGGAAGGAGCAGAGTCCCAGGCTGGGGCAGCTTGAGGGCTTGCAAAGAGCCTCTCTCTTCCATCTGGAAGGTTCTAGGTAGCCCAGCTAGAACTCTCAAAACTCACAAAGCACAAAGCAGGAGGAATGTTGGCTTCAGTAAAAGTCCTGACCATCCCAGGATAAGCACTCTGGAGGGCAGGCAGGGCCATTTCCAAGGTAGACTCCTATTCTCGGCAGCAAACCTGTGTGATTTCAAGGGCAACAGAAAAGCTGCTTAAGTGGGGGGTGGGGGTTACTTGCTAATTATTGTTGGTGATATTTGATTCTAGAAAGGGAGTTGTCTGTAGCATACTTGGCTAAAGAGTTAAATAGTTAAATATGTCTCTATCCTTCTCCACTTTTCCATGATTACCATGCAGGATGGGGAGGAGGGGGTGCATCTCAGGTGCTGCTCACACAGAAGCCCTGGGCACATGCAGCTGCTTGGCTTTGCTAGAGCATCAGCGGCATAGCCTAGATGCAGGCCGGCTGTCACCACTAACACTTAACGTCTGGTCCAGGAGTGATCAACTGTGGCCCAAGGGCCAGCCACGTGTGACCCAATGCACATTTGAGCGAGTAAAATCTTGTCATAAATCCATCAGCCCCTTTGTGTATGTCTCCTGCGGTTCCAGCAACCGTGATGAGGTCCACATAGCTCACAAGCCTGAACTGTCTTCTATCCAACTGTCCAGCCTTTTACAGACAGGCTTGGCTGCTGGGCTCTGGACTCCTGCCACAGTTTAGGGCTACATCTGGGAGATGAGTGGGCGTGGCTTCTGCTCTGAGCTAGCTCCATAACCAAGGCCCAACCACTTCCTAGAGGGTGGGTTTAGAGACCTGAACACGAGGTCAGTTGATTTCTGGGGCAGTGGCTTCAGGAACTTCACCTCATTGTGCCCCTTCTAACAG
Seq C2 exon
AGACCATCCAGCCCATCTGTCTGCCCAACTCTGAAGAGAACTTTCCCGATGGGAAACTGTGCTGGACCTCAGGATGGGGAGCCACAGAGGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024034:ENSMUST00000114549:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(25.1=100)
A:
NA
C2:
PF0008921=Trypsin=FE(14.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTACCACCCCAAGTCCTG
R:
ATCCTCTGTGGCTCCCCATC
Band lengths:
262-1963
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types