GgaINT0107001 @ galGal3
Intron Retention
Gene
ENSGALG00000016169 | F1NLT4_CHICK
Description
NA
Coordinates
chr1:112836966-112839307:-
Coord C1 exon
chr1:112839138-112839307
Coord A exon
chr1:112837062-112839137
Coord C2 exon
chr1:112836966-112837061
Length
2076 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATT
5' ss Score
6.49
3' ss Seq
TTCTTTCTTTTTTTTAATAGGTC
3' ss Score
11.03
Exon sequences
Seq C1 exon
CTTGTACTTACCGAGCTCATGGAGTGTGCAAGTTGGCTTTGTGACTCAGCAAGATACCCAGGTTCACACGTATTCAGTGGAAAAGATTATATACCATCGAAATTATAAGCCAAAGACCATGGGAAATGATATAGCACTGATGAAACTGGCAGCACCGCTTGCTTTCAATG
Seq A exon
GTAATTCATTGTGTGAGCTGTCACTTGACTTTCTCACTTCCCTAGCTAAGAGCACAGGCTGGGAAGTTCTTTTGGTCTGACACAGGCCATCTGGGTGCATTCTCACTTCCTCCAAAAACAATGAGAGAAGAGCAGCATAAATGTAGTGAACCTGCTGCTGTGATGGCACAGGATGCCTGCCCAAATGACACTGGCTTATCCCCCTTGCTCACCACCAGCCATAGGATGAGCCTTGGTTACTGTTCCAAGTACTGTCTCCACATGGCAGCAGAAAGCCTTCCCAGCCCCAACACCAGAAACATTTCTGCACTCCATATTCAGGTACAGAGGCACAATGCAATCACAGGCACTGCAGGTTTCCAACTCATTCTGGTGTTGGCTTGCTGAAGGCATTTAATAATTGGCAAACATCAACTTTATTCTTTCTAAATAATTTTTTCCCATCTAAAATATACATCCCACCCAAAATATACATCCACCAATTTTATTGGACATCACAGAGATTTTTACAATGTTCTCGCTGTCCTTATTTCTGTGAGTATAGAGAGGTCCAGCCGTGCCCAAAGCTGAAAATCAAGTTTAAATTTCAAATAGAAGCCAATACAATGCAAATATAACAGTTCTTTTGAATTAAAACCACTCTTATTTTCTCAGTAGGATGCTGTCTATGGCTGACACAGCTAGTGAGTTGAAATAATGTGTAATAATTCTGTATGAATATAAATCATCGCCTACCAATATTTCCTATTCACTGTGAGCTCTTTCTGCAAAGGTGGACTGGCTCCCTAGTGCATCTAGATTGTCCATTCCTAAATCAATACTATTGAAATTGCCCACAGCAGGAGAAGTGTAACTAAATGACCTTTAAGATCCCTTCCAACCCAAGACATTCTGTGATTCTACGATTCTATTCTATTAAATCTTTCCAACTTCTAGTTTAGATAAAAATTCAGCTTGAATTTTTTCTGTTTGAAATTTCTGCCACTGCTGTTTTCTTTTGCTCAGGATCAAGTTTGTGAGGCTGCCAAGAATAGGTAAAGCTCTGCATCTGAACTGCGGACAAGGGGCCACCTGGGGAGCTTTGGAGGCTTGATGCTTTTAGCTGGAGTCATTGCATAGTGGAGAATTGTACTGCTAGGAATTACCCACTGTAGCATCATATCTTCCCTCCCTTTGTGCAGTGCTAGGCCACCTTGATAGCTTGTAGTTCATCCCTGTGAGCATCAAACACTGACTGTATTGCATAGCATTCGGTGCCCCAGAGCACAGAGGTACTCTAGGTCTATGAGTCCATGGATGGGAAACAAAGAGTACCCCAGACATCGTGCTGCCCTTTCAGAGGACTGCAGTAATGCATGCTTACAGCTGTCTTCACATGCCACTGCACAAAACCCATCACAAGGTACTATACCAGTCATGTTATAGCTAACCATGGCCCTTTCTCTGGCAGAGCAGCACGCCATGGGGTCTCAATTGTACCCATCAGCTGAGTACGAGGTGTATTTCTTATTTACCCATTCATCACTTTACTGACAACCCAACACATCTTTTATTACTTCCTTCTTGATGTAAATTAAGCCTGCTATAAATATCTGGCCATAAGACAAAAGACTTATAGAAAGTAGGATATTAGGAAAAATTTCTTCTCAGCAAGAGCGGTGAGGCAGTGGCACAGGCTGCCCAGGGAGGTGGTGGAGTCACCGTCCCTGGAGGTGTTCAAGAGCCGTGTGGATGGGGCACTGAGGGACGTGGGCAGTGGGCATGGTGGGGATGGGCTGATGGTTGGACTCAGTGGTCTTAGAGGTCTTTTCCAACCTTAATGGTTCTATGATTCTGTGATTCTATGATTCTATGATTCTATGATTCTATGATTCTATGATTCTATGATTCTATGAACTACTGAATTTCCTTATGTGGCGAGTGGATAGTTTTCTTAGAAACTTCATTGCATGCCATGTCCTGAAAGATTTATGCAAGCATATACCTTGTGTCAAATCTTGAAAATGATTCTCTCTTTTCTCTCGTTCTCTCTCTCTTTGCTTTTTTCTTTCTTTCTTTCTTTCTTTTTTTTAATAG
Seq C2 exon
GTCACATAGAGCCAATTTGTCTGCCTAATTTTGGTGAACAGTTCCCAGAAGGAAAAATGTGTTGGGTATCAGGATGGGGAGCAACTGTTGAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016169:ENSGALT00000026056:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(25.1=100)
A:
NA
C2:
PF0008921=Trypsin=FE(14.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]