BtaINT0150437 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021280 | TMPRSS3
Description
transmembrane protease, serine 3 [Source:HGNC Symbol;Acc:HGNC:11877]
Coordinates
chr1:144227315-144229596:-
Coord C1 exon
chr1:144229427-144229596
Coord A exon
chr1:144227411-144229426
Coord C2 exon
chr1:144227315-144227410
Length
2016 bp
Sequences
Splice sites
5' ss Seq
ATGGTACGT
5' ss Score
9.89
3' ss Seq
CTTGTTTCCTCTCCAAACAGAGA
3' ss Score
9.72
Exon sequences
Seq C1 exon
TCTCTACCTCCCCAAGTCCTGGACCATCCAGGTGGGCCTTGTTTCCCTGCTAGACAGTCCAGCCCCCTCCCATCTGGTGGAAAAAATCATCTACCACAGCAAGTACAAGCCGAAGAGATTGGGCAATGACATCGCCCTCATGAAGCTGGCCGGGCCTGTCACTTTCAATG
Seq A exon
GTACGTCCGGGATCTGTCTTTTTCCTGCTATCATTGTTTCAGGAGAATCTGAATTGCCTGTTGAAGCATGTTGATGAAGGCTGCCTTACAATTTCCACTAGGTAATTCCAATGTCTAGTCCTATGTCCAGATTCATTTCTGTGTTGATTGTTCTCAGCTGATCGTCTCTTTGCATTAAACTTGTGATTTTCCTGGTTCTTGGTATGAGGAGAAATTTTTAATCACATCCTGGGCATTTGGGCCAGCATGTTAGGAGACAGACATCTTCAGTTTTAACAGACGGTCACCCTGTTCAAGTTTACTGTGAGGTCTTGGTCTACTTTTGTGGGTTGTGGTTCTGATGACTGTTTGACGTCAGAGGCTCTGTGGCTCTAGTTTGGCCAACTTGGTTTGCCTGGGGCCACTGAGGTCTCACCTGAGCTACTTTCTTTCAGTTAGTGCCTCTTGGAGATTAAAGGGGTTTCCCCAGACCAGGCCACCTGGTACCTGTGGGTGGTAGAAGGGGGTCTTAGGTCCCTGGGGACAAAGAACTTTTCCTTGTTTGGTGCTTATTTTGGTGAGGTGCTCTGCCAGTGCCACACACAAGCCTGGTATCTTGACCTTGGCTGAGGAAGGGAAGGCCTCCCAGGCTGGCCAGCTGGCTGGGGTGGGATCTTCTCTGTGGCCCTTTCTGTATAAACTGGAAGATACTGGGCATCTCCAACTCCTGGAAATACTCAGAAATATTCTCTCACAACCAGCTGCTGAGTCCAGCAGCTCTGTTTACCCATGGAAATGTCAAGTCCTAATGATTGGAGGTTTCAAAAACACCAGAAAAGTCACCCAGGACAGAATTCTCCAGCTGTTTGCCATTATGACAGAGCACATGAGCCTCTGCCTAAATCAGGAAAAGCCCCCTTCTTCTTCCCAAGGACTAGAGCAGCTTGGAGATCAGGTAGAGTATAACAAACATGGCCCTTGCTGGAGCAGAAACCTGGCTCAGGACCAACAGTAGGTTGGAGCCTGTAGAGTCATCAACGCATTTATCACACAGCACACAGAATTCTCTATGCGTCACACTCTGAGACAAATATTTCTAGAAAAACAAAGAGAAGTTGTAATGGTGGTGTTCCTTTGCTAATTATGATTAATGATCCTTGGTTATAAAAAAATGAGGTGCCAACACTTGCACTTTGATAAAACTGAAAATGAGTGCCCTTGTCCTTTCTCCACCTTTCCATTTTTGTCCTACCTGGAAAGCTTAGTTCGTATCTCAGAATGTGGTCATGTGAAGGACCTGTGACAGCTTCTGGTGGAGGGCTTATGTGATACAGCCCCCATGGACAGGCAGGCTCATTGCCTCCAGATGTGTCAGGAGGGATGGGAAGATTCACAGAGCGATGTTCCATAAAGCAGTGTGCCCACAGTCTAGACCAGGAGTGGGCAGACTAGGGCCCATGGGTTGAATTGGACCTTCTGCCTCCTTTTAAATAAAGTTTTATTGACACATGGCCCACCCTGTTCACCACTGCCTGTGGCTGCTTTAACGCTACAATGGCAGAGGTAAGGGTTGAAATGGAGACCACATGGCTTACAAAGCCTAAAATGTATACTATTTTCCTCTTTACAGAAAATATGTTGACCTCTGGTCTAGACTCACTCACGTTGCCATGGTCTATGGTTGACCTGTGGTCTAAACTCACCCATGTTACCTTGGTCTTGGGTTGAGTTGACCTGTGGTCCAGACTCATCCGTGTTGCCTTGGTCTTGGGTTGAGTTGACCTCTGGTTTAGATTTACTCTCATGTTGCCATGGTCTACGGTTGACCTGTGGTCTAGACTCACCCATGTTGCCATGGTCTAGGGTTGTTTTAGGGCTCTGGTGGGGGAGAGGTCCCCAATCTGAGCACATGACCAGGGACCTGACCTTTTTCTGGGAGACACCCCCACCGCCAGCCCCGAGAGGCAGACACCAAGTGGCGGCTTTCTCAGACGGCAGCTTCCTTGGCCTAAGCTCTCTTGTTTCCTCTCCAAACAG
Seq C2 exon
AGATGACCCAACCAGTCTGTTTGCCCAACTCCGAAGAGAACTTTCCTGATGGAAAATTGTGCTGGACATCAGGCTGGGGGGCCACAGAGGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021280:ENSBTAT00000028354:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.030
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(24.9=100)
A:
NA
C2:
PF0008921=Trypsin=FE(14.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development