RnoINT0153450 @ rn6
Intron Retention
Gene
ENSRNOG00000002145 | Tmprss7
Description
transmembrane serine protease 7 [Source:RGD Symbol;Acc:1304655]
Coordinates
chr11:60111813-60113804:+
Coord C1 exon
chr11:60111813-60112006
Coord A exon
chr11:60112007-60113765
Coord C2 exon
chr11:60113766-60113804
Length
1759 bp
Sequences
Splice sites
5' ss Seq
ATGGTGATT
5' ss Score
3.18
3' ss Seq
TCTTTCCTGTTTCAATGCAGCTG
3' ss Score
9.73
Exon sequences
Seq C1 exon
CAGTAACAACAAAGGCGGTCTCCTGGTCCACTTTTGGATTGTGTTTGTCATGCCCCATGCCAAGGGCCACATCTTCTGTGAGGAATGTGTGGCAGCCATCTTGAAGGACTCCATCCAAACCAGTATCACAAACCGCACCTCTGTGGGGACCTTGCAGGGTCTGGCCGTGGATATGGACTCTGTGGTATTAAATG
Seq A exon
GTGATTGTTGGGTAATTCTCCTTGAAGCATTCTTCAACATCACCTCTGATACTCACATTACACTGTTAACATTGTGGTAGAGACTTCCATGATCCCAGGAGCCACTGGAGTGATTGTTGCTGAAGGGAATTCTTTAATGTTATACCCAGTATGATTGAAAAGGATTGTGAACAAGTAGGTGCAGAATTATATTTAGTAAAGTGTGTCCCTTCGTGCCGTTATTGAGCTGAGGCTCCTTCAGACTATGTCCCTAAGGAAGAAAGTTCGAGAGCAGAAGAATTTTACTGAAGTTTGGCTTATCTTCCGTTTTGTCCTATTGTTGTTGCTGGAGACAGAATGTTGAGTTTGGTCTCCGGATAAAGTGGCAAATATTAAAAGGCTTTCATGGGCAAAGTAAAGAGGGAAAATAAGAGAAAGGTTATGTGAGCATTCAGTGAAGGGAAGGCATTGTACAGCATGGAAAGAGGAAGCAAGTGCACAAGGAGGGGAAAAGAGAAATGGTGGTCATGAAGATTTTATCACAAGTATATTTTTAATTGTGTGTGTGTACATACTATGGCACATTTGTATAGGCCAACTTGTGAGAGCTGATTCTCTCCTATCCTGTAAGTATTAAGTTCAGGTCACCAGGATGGGCATCAACAGACTTCATCTGCTAAGCCATTTGGTGGCTCCTGGGTCTTTGTTTATTGAGCCTTTGGAGGTTAAGGTGGGGTCAAGGGGACGCAGACTTTTGTGTGTGAAAATAAATGAGCCCAAGCATGTAAAAATGAACTCCATCTTTAAAGGCTTTCACGCATTTGTGTTTAGTGTGGAAAATACCACCATAAAGGTTGTGTTATACACCTGTGCTAAGTGCAAGTGCCAGGTACCTGCCTCTTGCCCAGAAAGATCTAGTGCCATTTCTGGAAGATCATGTTGCAGTAGCTTGTAGCAGGGAACACATATGGCCTAAGAATTAAGATGTGTATTTGGACAGGTAATAGCTAACCCCACATTATTGTCTTCTTTGCCTCATTGAGCTAAGGAGGAAAATATGTAAATGCACTATACTGCCGGCACATTTATTTATTTATTCATTTTAATTAATTAATTAATTAATTTTAACTTTGTGATGAGTTGGAAGCTGGTCAAAGGTTACTATTGCAGGAAAGTCCAACATTTGAAATCTGCCTCCCCAGACCTCTTCTCTAATGCCTGGCCTACACCAGTGCTTCCAAACAGGCTGAGCCTTAGCCCCATGGAAATATGATGTCACCCTCTGTCCTGACAATGCAACATTGTAACTCTCAAATTATTCTGCAGCTATCCCTGCTGATGTAAAATGTACGTGTATAACTGCCATTATACACACACAGATATACTAGATGTCATGCAGATTTACTAGATAATGCTTACAGCAGGTGGCTGGCATTTGGTTTGAACAAATGGAAAAAATCTCTAGTAGAAAATTTCACACTATATTTACTATTCCAGCCATAGCACTAATTGCTATTGTTTACGTAGTTGCTTTCTTTGTAACTATGAATTCAAGGAAGCAAATCAAATGGAATGCTGGTTTCTCAGAGATGCAAAGGCGCTCATCTCCTCTGCTCTATCTTAGCTTTAAACACCCAAATAGCTCTGCTCATCCCTGGACCACTGTGACGTACAAGCCATACCAGATGTGCTTGATTATTTTAAAGAAGGAATGAGAACAATTTTTCTAAACAATGAACTTCTGGAACCAACAGTCTTTTTCTTTCCTGTTTCAATGCAG
Seq C2 exon
CTGGGCTCCGGTCGGATTACTCTTCAGCGGTAGGATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002145:ENSRNOT00000045521:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0139015=SEA=PD(43.1=71.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAACAACAAAGGCGGTCTCCT
R:
CAGATCCTACCGCTGAAGAGT
Band lengths:
231-1990
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]