RnoEX0092140 @ rn6
Exon Skipping
Gene
ENSRNOG00000002145 | Tmprss7
Description
transmembrane serine protease 7 [Source:RGD Symbol;Acc:1304655]
Coordinates
chr11:60110457-60113804:+
Coord C1 exon
chr11:60110457-60110524
Coord A exon
chr11:60111813-60112006
Coord C2 exon
chr11:60113766-60113804
Length
194 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTCTTTTCACTATAGCAG
3' ss Score
8.32
5' ss Seq
ATGGTGATT
5' ss Score
3.18
Exon sequences
Seq C1 exon
GTAAACCTTGTTTATACAACATCTGCTTTCTCCAAATTTTATAAGCAGTCTGTGGTTGCAGATGTCAG
Seq A exon
CAGTAACAACAAAGGCGGTCTCCTGGTCCACTTTTGGATTGTGTTTGTCATGCCCCATGCCAAGGGCCACATCTTCTGTGAGGAATGTGTGGCAGCCATCTTGAAGGACTCCATCCAAACCAGTATCACAAACCGCACCTCTGTGGGGACCTTGCAGGGTCTGGCCGTGGATATGGACTCTGTGGTATTAAATG
Seq C2 exon
CTGGGCTCCGGTCGGATTACTCTTCAGCGGTAGGATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002145-'5-10,'5-7,9-10
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139015=SEA=FE(20.2=100)
A:
PF0139015=SEA=PD(43.1=71.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAACCTTGTTTATACAACATCTGCT
R:
CAGATCCTACCGCTGAAGAGT
Band lengths:
106-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]