GgaEX6003951 @ galGal3
Exon Skipping
Gene
ENSGALG00000015389 | E1C7W0_CHICK
Description
NA
Coordinates
chr1:91894420-91896616:+
Coord C1 exon
chr1:91894420-91894487
Coord A exon
chr1:91895478-91895671
Coord C2 exon
chr1:91896578-91896616
Length
194 bp
Sequences
Splice sites
3' ss Seq
GTAGGACCTTCTTATTTCAGTAA
3' ss Score
3.28
5' ss Seq
GTGGTTAGT
5' ss Score
4.94
Exon sequences
Seq C1 exon
ATGAACTTGGTTTACACTACCTCCTCTTTCTCCAAATTTTATAAGCAGTCCACTGTTACAGAAGTCAG
Seq A exon
TAACAACAATAATGGAGGCCTTCTTATTCACTTCTGGATCGTATTTGTGGTACCACAGGCAAAAGGCCAAGCGCTGTGTGAGGACTGTGTGGCTGCCATTTTAAAGGATTCTATTCAGACAAGCATTGTTAATCGGACCTCGGTGGGAACTCTTCAGGACCTTGCAGTTGACATGGACTCCATCGTACTAAGTG
Seq C2 exon
CCGGTCTTCGGTCAGATTACTGGTCAACAACGGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015389-'4-4,'4-3,5-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139015=SEA=FE(20.2=100)
A:
PF0139015=SEA=PD(43.1=71.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACTTGGTTTACACTACCTCCT
R:
CTGTTCCCGTTGTTGACCAGT
Band lengths:
106-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]