MmuEX6062631 @ mm9
Exon Skipping
Gene
ENSMUSG00000033177 | Tmprss7
Description
transmembrane serine protease 7 [Source:MGI Symbol;Acc:MGI:2686594]
Coordinates
chr16:45680633-45684751:-
Coord C1 exon
chr16:45684684-45684751
Coord A exon
chr16:45683522-45683715
Coord C2 exon
chr16:45680633-45680861
Length
194 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTCTTTTTACTATAGCAG
3' ss Score
8.12
5' ss Seq
ATGGTGATT
5' ss Score
3.18
Exon sequences
Seq C1 exon
GTAAACCTTGTTTATACAACATCTGCTTTCTCCAAATTTTATAAGCAGTCTGTGGTTGCAGACGTCAG
Seq A exon
CAGTAACAACAAAGGCGGTCTCCTGGTCCACTTTTGGATTGTGTTTGTTATGCCACATGCCAAGGGCCACATCTTCTGTGAGGAGTGTGTGGCGGCCATCTTGAAGGACTCCATTCAAACCAGTATCATAAACCGCACTTCTGTGGGGAGCTTGCAGGGTCTGGCTGTGGATATGGACTCTGTGGTATTAAATG
Seq C2 exon
ACAACGGCTGCTCCCGGTACTTGTATGCAGACCATCTGACCCTCCGCTACCCTCTGGAGATTTCCGCAACCTCGGGACAACTAATGTGTCACTTCAAGTTGGTGGCCATCGTGGGTTATCTGATTCGTCTCTCCATTGAATCCATCCAATTGGAAGCCGACAACTGTATCACCGACTCCCTGACTGTTTATGACTCCCTCTTGCCAATCCGGAGTGCCATTCTATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033177-'4-7,'4-4,5-7=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139015=SEA=FE(20.2=100)
A:
PF0139015=SEA=PD(43.1=71.2)
C2:
PF0043115=CUB=PU(65.8=94.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGCAGTCTGTGGTTGCAGA
R:
TAGAATGGCACTCCGGATTGG
Band lengths:
251-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: