HsaEX6057641 @ hg38
Exon Skipping
Gene
ENSG00000176040 | TMPRSS7
Description
transmembrane protease, serine 7 [Source:HGNC Symbol;Acc:HGNC:30846]
Coordinates
chr3:112044255-112047012:+
Coord C1 exon
chr3:112044255-112044322
Coord A exon
chr3:112045750-112045943
Coord C2 exon
chr3:112046974-112047012
Length
194 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTTTTTTCGTTATAGCAG
3' ss Score
9.53
5' ss Seq
ATGGTGATT
5' ss Score
3.18
Exon sequences
Seq C1 exon
ATAAACCTGGTTTATACAACATCTGCCTTCTCCAAATTTTATGAGCAGTCTGTTGTTGCAGATGTCAG
Seq A exon
CAGCAACAACAAAGGCGGCCTCCTTGTCCACTTTTGGATTGTTTTTGTCATGCCACGTGCCAAAGGCCACATCTTCTGTGAAGACTGTGTTGCCGCCATCTTGAAGGACTCCATCCAGACAAGCATCATAAACCGGACCTCTGTGGGGAGCTTGCAGGGACTGGCTGTGGACATGGACTCTGTGGTACTAAATG
Seq C2 exon
CTGGGCTTCGGTCGGATTACTCGTCAACCATAGGATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176040-'5-8,'5-6,6-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139015=SEA=FE(22.0=100)
A:
PF0139015=SEA=PD(43.1=71.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAACCTGGTTTATACAACATCTGCC
R:
CAGATCCTATGGTTGACGAGTAATCC
Band lengths:
106-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains