BtaEX6000898 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015065 | TMPRSS7
Description
transmembrane protease, serine 7 [Source:HGNC Symbol;Acc:HGNC:30846]
Coordinates
chr1:57232360-57235426:+
Coord C1 exon
chr1:57232360-57232427
Coord A exon
chr1:57233685-57233878
Coord C2 exon
chr1:57235388-57235426
Length
194 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTCTTTTCACTGTAGCAG
3' ss Score
8.89
5' ss Seq
ATGGTGATT
5' ss Score
3.18
Exon sequences
Seq C1 exon
ATAAACCTGGTTTACACAACATCTGCCTTCTCCAAATTTTACAAGCAGTCTGTAGTTGCAGATGTCAG
Seq A exon
CAGTAACAACAAAGGTGGCCTCCTTGTCCACTTTTGGCTTGTATTTGTCATGCCTCATGCCAAGGGCCACATCTTCTGTGAGGACTGTGTGGCTGCCATCTTGAAGGACTCCATCCAGACGAGCATCATAAACCGGACCTCTGTGGGGAGCCTGCAGGGTCTGGCTGTGGACATGGACTCTGTGGTATTAAATG
Seq C2 exon
CTGGTCTTCGGTCAGATTACTCTTCAACCATAGGATCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015065-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139015=SEA=FE(20.2=100)
A:
PF0139015=SEA=PD(43.1=71.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAAACCTGGTTTACACAACATCTGC
R:
AGATCCTATGGTTGAAGAGTAATCTG
Band lengths:
106-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]