DreEX6094959 @ danRer10
Exon Skipping
Gene
ENSDARG00000086161 | TMPRSS7
Description
transmembrane protease, serine 7 [Source:HGNC Symbol;Acc:HGNC:30846]
Coordinates
chr24:21710658-21713114:-
Coord C1 exon
chr24:21713047-21713114
Coord A exon
chr24:21710930-21711123
Coord C2 exon
chr24:21710658-21710693
Length
194 bp
Sequences
Splice sites
3' ss Seq
TTAACATGTCACCCCATCAGTAA
3' ss Score
4.04
5' ss Seq
ATGGTAACC
5' ss Score
5.31
Exon sequences
Seq C1 exon
ATAACCAGCGTATACCGAACCTCATCAGTGGGCAGACTCTACAAACAAACCGTGATCTCTGATCTGAG
Seq A exon
TAACAATAATCAAGGTGGTGTGCTGGTGCACTTCTGGATGGTGTTTTTGGTTCCACAATTGAAGACACCAGTGGTGTGTGAGGAGTGTGTCAGTGCCATCCTGAGGGACTCTGTGCTTATGAGTATGAAGAACAGGTCTACAGTGGGATTTCTACAGGGTCTTCCTGTCGACATTGACTCCATTCTCGTCAATG
Seq C2 exon
TTGCTTTACGGTCAGATTATACATCAACAGCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086161-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139015=SEA=FE(20.2=100)
A:
PF0139015=SEA=PD(43.1=71.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGCGTATACCGAACCTCA
R:
CAGCTGTTGATGTATAATCTGACCG
Band lengths:
98-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]