HsaINT1044720 @ hg38
Intron Retention
Gene
ENSG00000176040 | TMPRSS7
Description
transmembrane protease, serine 7 [Source:HGNC Symbol;Acc:HGNC:30846]
Coordinates
chr3:112045753-112047967:+
Coord C1 exon
chr3:112045753-112045943
Coord A exon
chr3:112045944-112047738
Coord C2 exon
chr3:112047739-112047967
Length
1795 bp
Sequences
Splice sites
5' ss Seq
ATGGTGATT
5' ss Score
3.18
3' ss Seq
AAATGGTGCTGTCTCCACAGACA
3' ss Score
7.8
Exon sequences
Seq C1 exon
CAACAACAAAGGCGGCCTCCTTGTCCACTTTTGGATTGTTTTTGTCATGCCACGTGCCAAAGGCCACATCTTCTGTGAAGACTGTGTTGCCGCCATCTTGAAGGACTCCATCCAGACAAGCATCATAAACCGGACCTCTGTGGGGAGCTTGCAGGGACTGGCTGTGGACATGGACTCTGTGGTACTAAATG
Seq A exon
GTGATTGTTGGGTAATTTTCCTTTAGCATTCCTTCCTGCAGGACTCCTGATACTTGCCATGATTATAGTCAACATTGTAATGAAGCATTACAATGTGGGATTACCCCACAATCCCAGTGGCGCAGGATTAACTAAAGACATTGGAGCTATGTTAGTAAAGGAAATTGCTAAATGTTGTATATTGCAATTGAACAATAGATGTGGGGACAATATACATACGAAATTGAATGTATTACTGTGTACCTCTACCTACCTTTATTCAGGTCATGCATCATCAAACTAAGTCCCCAAAGAACAAAACCCTAGACAAGGAAGAATTTTGCTGAGGTTTATCTTGTTACTTTACTTGCCCAGACAGAACTGTCCCTTTACTGTGTAATGTTGTCCAACACTCCAAAACAGCTTGCTTCATAGCCCCAAATGCAAATTTCATTGTTTGCCTTGATAGTAAAATGGTTTAATGATTGCATAACTCAAAATTTGTGCAGTTTTCTGTTTTGATTTAAATTTTATAGATAAAATACATATATGAACATGTTATAAGTATATTATAAATTTGTGTGTATTTAAAAATATATAAGTATATTATACACACACACATACACTAGGCATATGGTAGGTAGCTGACAAATATTTGTTAAATAAAGGAAAAATCTCATAGAAAATTCTGTATCTCATGTACTATTTCATATATAGGACTAATATCATATTTGTTTGGTTGCTTTTTTACCTTTGAAAATATTTGAAACTTGCAACTACAATTTCAAGGATACAAAAGTAAAGAGAATAGTATAGTGAACTCTCATACACCCTTTACTCAACCTCGACAACTACCAACTCACTCATGACTATTCTATTTGATCTCTAAATACCTGAACAACTACCTCATCCTCACTGGATTATTTTAAAGTAAATCCCAGATGTGTTTGATTGCCTTTAAAGAAGGACTGAAAATAATTTTTACTAAGCAAAATTCTAACAAAATGAAATGATAGGATTCAATCTCTTCTCATGTGCTTTTTCAATGCAGCTGGGCTTCGGTCGGATTACTCGTCAACCATAGGATCTGGTAAATTCTTTCATGTGGTTCCCCCTCCCCCCATGTTAATATTGTTTTTGGCTGTAATTTTCATTTTCTAATTGATGGTATTTGTTAGTGCTCTTTTAATTGCAAGTGACAGAAATGCATTCAAACTGCCTTAAGCACAAAAGAAACTTGACTGGCTCATGTAAGTGGGACATACATGGAGTGTGCTGGCGTTAGTTATGGTTGAGTCTAGGATCTAAAATAAAAATATCATCAGAACTCTGCATCTCTGCCTACTTCTATGGAGCCTTCTTTATCAAGTGTGCTCTTCCACTGTATTTGTAACAAGGACCACCAAGCAGATCCAAACTTATAATTTATCATTTTCTAAACCATGATGAAAACCACCTCCACGTATTTCCTGATTGCTCTTGCAGAAGTCCTGGGGCTGACTCTCATTGTCTGGATTGACTGACATGCCTATTCTTGAAATGACTTCTTTGACTCTGATTGGCCAGCCTGGGTTATGTGCCCACCTCTGAAACTAGGGGTGAGTTTAACCCCAACCAAACTATATAGACAGAGTGTGGATAGTTTCTAAAGGCAAAATGCTGGGCTGTTACCAGAAGGCAGGGAAGTGGACCTAGGCTGGCCATATGTCCTTCACATGACCTCTTTTGCCCTTTACTTTTCTATAAAGATTTCTGTTTTTATAAAAGTCATTCCTAAAAAAAAAGAAAATAAAGGAAAATGGTGCTGTCTCCACAG
Seq C2 exon
ACAAAGGCTGCTCTCAGTACTTCTATGCAGAGCATCTGTCTCTCCACTACCCGCTGGAGATTTCTGCAGCCTCAGGGAGGCTGATGTGTCACTTCAAGCTGGTGGCCATAGTGGGCTACCTGATTCGTCTCTCAATCAAGTCCATCCAAATCGAAGCCGACAACTGTGTCACTGACTCCCTGACCATTTACGACTCCCTTTTGCCCATCCGGAGCAGCATCTTGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176040:ENST00000419127:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0139015=SEA=PD(46.0=70.8)
A:
NA
C2:
PF0043115=CUB=PU(65.8=94.8)
Main Inclusion Isoform:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTGAAGACTGTGTTGCCG
R:
CTGTACAAGATGCTGCTCCGG
Band lengths:
349-2144
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains