DreINT0021361 @ danRer10
Intron Retention
Gene
ENSDARG00000086161 | TMPRSS7
Description
transmembrane protease, serine 7 [Source:HGNC Symbol;Acc:HGNC:30846]
Coordinates
chr24:21709099-21710693:-
Coord C1 exon
chr24:21710658-21710693
Coord A exon
chr24:21709328-21710657
Coord C2 exon
chr24:21709099-21709327
Length
1330 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
TCGTCTCTCTGTATACACAGGAT
3' ss Score
7.66
Exon sequences
Seq C1 exon
TTGCTTTACGGTCAGATTATACATCAACAGCTGTGG
Seq A exon
GTAAGTCAAAATGAATACAAACAGGGAAATGCACACTACTGTTAAAAGGTTTGGTGGTTGGTAGGATTTTTTGTAGGATTAAAATTCTTTTCTCTTATGCTCATACAGAGCAAAAATAGTTTTTCTGTTTCAATATATTTTGAACATTAAATTATTCCTGTGATGTCAAATTTTAGTTTAGTCAATATGGAAAACCGCTTTGCTGCTTAATATTTTTTTAAACAATATATTTTTTTAATAGTTAAATAATTGAAACCTTTGGTAACATAAAAGTCTTCACTGTCACTTTTTATCAGTTGAATGCATCTTCGCTGAGTAAACGTACATGTAAAAAAGTAAGCGACCCCAAACTATCAAACAGTACATATCTGTTCATTTGACATGCAGAAAACTTCAGAATGTCAATAGTTTGTTTTCATTGTAGTAAATGCTGAAATTAACAAACTAAGGTTATAGTAAAGTATTTTTCATTGTTCATTTTGTTAACTAATGCGATTATCTAATGGAAACGTGTTGTAAGTTGTACCAGTGCACATAAATATATTTCATTTCAGCAAATAATTATGTGTTAATAGTTTTATTACTATTGCATTCTTTTAATGGATTTGCTTCAAAACTACACTACCTGACAAAAGTCTTTTCGCCTATCCAAGCTTTAGGAACAACAAATAATAACTTGACTTCTAGTTGATCATTTGATATTCATTTGGTATTCATGCTTGATTTATAATTATTTAATTAGGACAGTATGGTCTAACTTTATTATTTGACTAAAGTGTTGTCACCTAACATAAATAATGTACAGTATAGAATATAAAGTCTTGGTGCAGTGGAAAGAAGTAATATTGTGTATAACTCTCATGAGCTTGGAGGACTGCATCCATACATCTCTGCCTATGACTATGTAATGGGCAGCACAAATGTCTTGATACCTCATGCTGTTGATGTTGCCATCCACTCTGCAGATCTTTTGCATGCCCCAATATTGAAAGTAACCCTAAACCATTTCTCCTTCACCAAACTTGACTGATTTCAGTGAGAATCTTGGATCCATGCGGGTTCCAGTAGGTCTTCTGCAGTATTTGTGATGATTGGGATGCAGTTCTACAGATGATTTATCTGAAAAATCTACCTTCTGCCCCTTTTCCAAATGATCAACTAAAAGACAAGTTATTATTTGTTGCTCTTACAATGACAAGACTTTTGTCGGGTAGTGTAGTGTTCAACCAATGAAAGTCAAACTGATTGTTGGTAATGTGGTTCATTCAATAAAAATGGACCCAATCAAATGCATATGATGGGACCTGTAATCGTCTCTCTGTATACACAG
Seq C2 exon
GATCTCAGTGTGTGGATAAGCTGTACGCAGGTGTTCCTGGTGTGAATGTTCCCCTCAATGTGTTTTCCTCATGGGGAGGCTTGAGCTGCTACATCAAACTGACAAGTGTCCCAGGTTCTGTCATCCAGCTCACTGTGAAGAGTTTGCGCCTTGATCCGAGTGACTGCATTTATGATGCCCTCATTGTATATGATGCTCTGCTTCCCATGAGAGGCATGATTCTGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086161:ENSDART00000129558:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0043115=CUB=PU(57.8=67.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTTACGGTCAGATTATACATCA
R:
CTGTACAGAATCATGCCTCTCA
Band lengths:
264-1594
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]