MmuINT0162781 @ mm9
Intron Retention
Gene
ENSMUSG00000033177 | Tmprss7
Description
transmembrane serine protease 7 [Source:MGI Symbol;Acc:MGI:2686594]
Coordinates
chr16:45680633-45681724:-
Coord C1 exon
chr16:45681686-45681724
Coord A exon
chr16:45680862-45681685
Coord C2 exon
chr16:45680633-45680861
Length
824 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAAC
5' ss Score
4.14
3' ss Seq
AAGGAAGGTTCTGTCCACAGACA
3' ss Score
4.57
Exon sequences
Seq C1 exon
CTGGGCTCCGGTCAGATTACTCTTCAGCTGTAGGATCTG
Seq A exon
GTAAACTCATGACTTTCTTCCTTACCCCCCCTATTAGTGCATATATATGCATATATGTATGTGTATGTATATGTGTATAGATATGTGCATATGCATATATATGTATATGCAATATATACATACATATGCATGTGTATTGTGTGTGCTATACTTCACTTTTCTAATGATGTGATCTGTTATTTTTCTTTTAGTTGTGAGCGACAGCAATGTAATTGGCTTTAGCACAAAAGAAACTTGATTGGCTTATGTATTAAATACTAGAGACAGATATGGGCTACATTTGAAATCAAGTTCTAAAAGGAAATGCTTAAGGGACCCCATATCTCTGCCTTTTTTATTCTGAGGCTTTGCTCTCAAGCTCAGCTTTCATTGTGGTAGCAAATCAAAGGTTCGGCTTGATCAGTTCCTCAGTCATAGTGGAAAACTCCTGCAATCAGACTTTATGCAAGTTTTTGTAGACCTTCTGAACCGAATCCCGATATGCAGACTGGGTAATGTACCCAATCCTAAGCCAACTTCTTTGAGTGTTTAGCCAGTCTGGCCATGTGTCCGATTATCAAATCAGAGGTAAGCCTCAACTAAACTATGGGCTAAGTAGAGGCAGTTTCTCAAAGTAATAGGTTCTGTCACCAAACGAGAGAAGCATAGAGTTTAGACTGGCAAGGAAAACAAGTGACCTCCGTATGACGGCTTTTGCTCACTACTCTTCTATAGAGGTTTCTAGAAAGGTCATGCATGCCTTGAGAAGAAGGGTTGGTGGAGAGGAGGGCAAGGAGGAAAGGGAGAGAAAGAGGAGGAGAGACTAAGGAAGGTTCTGTCCACAG
Seq C2 exon
ACAACGGCTGCTCCCGGTACTTGTATGCAGACCATCTGACCCTCCGCTACCCTCTGGAGATTTCCGCAACCTCGGGACAACTAATGTGTCACTTCAAGTTGGTGGCCATCGTGGGTTATCTGATTCGTCTCTCCATTGAATCCATCCAATTGGAAGCCGACAACTGTATCACCGACTCCCTGACTGTTTATGACTCCCTCTTGCCAATCCGGAGTGCCATTCTATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033177-Tmprss7:NM_172455:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0043115=CUB=PU(65.8=94.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCTCCGGTCAGATTACTC
R:
TAGAATGGCACTCCGGATTGG
Band lengths:
262-1086
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: