BtaINT0150490 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015065 | TMPRSS7
Description
transmembrane protease, serine 7 [Source:HGNC Symbol;Acc:HGNC:30846]
Coordinates
chr1:57235388-57236390:+
Coord C1 exon
chr1:57235388-57235426
Coord A exon
chr1:57235427-57236161
Coord C2 exon
chr1:57236162-57236390
Length
735 bp
Sequences
Splice sites
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
3' ss Seq
ACCCAGTGCTGTCTCCGCAGACA
3' ss Score
8.65
Exon sequences
Seq C1 exon
CTGGTCTTCGGTCAGATTACTCTTCAACCATAGGATCTA
Seq A exon
GTAAGTTCTATCTGTGGTTTCTTCCCTGCCCTTCCTCCCCCCACCCATGTCCCTGCCTACAAATCTACATCCTTTCTGGCTGTAGCTTTCCTGTTCAGTGGTATTTGTTAGTGTTCTTTCAGTTGCAAGTGACAGATGGATATTCAAACTAGGTTAAGCATGAAAGAAACTTGATTGACTCATATAACTGGGACATACATGGAGTATGTTGGCTGCAGGCATGGTTGGGTCCAGGTTCTAAGATAAAATGTCATCAGGACTCTGCATTCTTGCTTTCTTCTGTTGAGGCTTCATCAAGTGGTTCTTCCAGTGTGGTGGCGTAAATGGCCACTAGCAGATCCAAGCTTATAATTTATCAGTTTAGCAACCATGATGGAAAAAAAGAAAATCTCACCTATATTTCATGATAGTTTCTGCAGAAGTCCTGGCACTAAGTCTCATTGTCTCAAACTGGCTGATATGCCGCCTCTTTGCTTCTTTGGCTCTGATTGGTCAGTCTGGATTGTGTGCTCACCTCTGGATCTAGGGGTGAGTTTAACCCCAATGAAGCCATGTAGAGGATGGTTTCTCAAAGTAAAATCTAGGCACTGTTATCAGAAGATATGAGAGTGGATTCTAGGCTGGCAAAAGCAGCAGATGTTCTCCATGTGAGCTCTTTTGTTTATTTTTTATAAAGATTTCTAGAAAAATCATTCCTAAAACAAAACAAAGCAAAACCCAGTGCTGTCTCCGCAG
Seq C2 exon
ACAAAGGCTGCTCCCAGGACTTCTACGCAGATCATCTGTCTCTCCGCTACCCTCTGGAGATTTCAACAACCTCAGGGAGGCTGATGTGCCACTTCAAGCTGGTGGCCACAGTGGGCCATCTGATCCGACTCTCGATAGAGTCTGTCCAGATTGAAGCCGACAACTGTGTCACTGACTCCCTGACCATTTATGACTCTCTCTTGCCAATCCGGAGCACCATCTTGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015065:ENSBTAT00000020053:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0043115=CUB=PU(65.8=94.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTCTTCGGTCAGATTACTCT
R:
TGTACAAGATGGTGCTCCGGA
Band lengths:
267-1002
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development