HsaINT0169779 @ hg19
Intron Retention
Gene
ENSG00000176040 | TMPRSS7
Description
transmembrane protease, serine 7 [Source:HGNC Symbol;Acc:30846]
Coordinates
chr3:111766255-111766814:+
Coord C1 exon
chr3:111766255-111766367
Coord A exon
chr3:111766368-111766585
Coord C2 exon
chr3:111766586-111766814
Length
218 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
AAATGGTGCTGTCTCCACAGACA
3' ss Score
7.8
Exon sequences
Seq C1 exon
AAGTCCTGGGGCTGACTCTCATTGTCTGGATTGACTGACATGCCTATTCTTGAAATGACTTCTTTGACTCTGATTGGCCAGCCTGGGTTATGTGCCCACCTCTGAAACTAGGG
Seq A exon
GTGAGTTTAACCCCAACCAAACTATATAGACAGAGTGTGGATAGTTTCTAAAGGCAAAATGCTGGGCTGTTACCAGAAGGCAGGGAAGTGGACCTAGGCTGGCCATATGTCCTTCACATGACCTCTTTTGCCCTTTACTTTTCTATAAAGATTTCTGTTTTTATAAAAGTCATTCCTAAAAAAAAAGAAAATAAAGGAAAATGGTGCTGTCTCCACAG
Seq C2 exon
ACAAAGGCTGCTCTCAGTACTTCTATGCAGAGCATCTGTCTCTCCACTACCCGCTGGAGATTTCTGCAGCCTCAGGGAGGCTGATGTGTCACTTCAAGCTGGTGGCCATAGTGGGCTACCTGATTCGTCTCTCAATCAAGTCCATCCAAATCGAAGCCGACAACTGTGTCACTGACTCCCTGACCATTTACGACTCCCTTTTGCCCATCCGGAGCAGCATCTTGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176040-TMPRSS7:NR_026734:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0043115=CUB=PU(65.8=94.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGCTGACTCTCATTGTCT
R:
GGTCAGGGAGTCAGTGACACA
Band lengths:
292-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)