RnoINT0155079 @ rn6
Intron Retention
Gene
ENSRNOG00000018611 | Tpsb2
Description
tryptase beta 2 [Source:RGD Symbol;Acc:3065]
Coordinates
chr10:14722756-14723278:+
Coord C1 exon
chr10:14722756-14722972
Coord A exon
chr10:14722973-14723112
Coord C2 exon
chr10:14723113-14723278
Length
140 bp
Sequences
Splice sites
5' ss Seq
CTTGTGAGT
5' ss Score
7.15
3' ss Seq
TGCTTCTTGTCTTTCTCCAGGCC
3' ss Score
11.18
Exon sequences
Seq C1 exon
TTTGTAACCTGGTGCACCAAGACCCCAGACTCCTGAGATGAACCTACCCTCCATCTCACGGGCCCTGGTTCCATTCTGGACTTGATAATCTGCCCACCCCAGTCCAGCCCTGTCTCCCAGCTGGACTCAGACCGTACTCCTCACTGCTTTCAGATGCTGAAGCTGCTGCTGCTGCTGGCACTGTCCCCCCTGGCTAGTCTGGTGCACGCGGCCCCTT
Seq A exon
GTGAGTTGTCTTGATCCCTCCCCATCTCTCTCCCTGACCGTCACAGGCCACAGGAATGGGGGAGTTTGGAGAATCCATAGGATAGCTCCAACTCGGAAGGGCAAGCCAGGACACTGAGGTTGCTTCTTGTCTTTCTCCAG
Seq C2 exon
GCCCAGTCAAGCAGCGAGTGGGCATTGTGGGAGGACGAGAGGCTTCTGAAAGTAAGTGGCCCTGGCAGGTGAGCCTGAGATTTAAATTCAGCTTCTGGATGCATTTCTGTGGCGGCTCCCTCATTCACCCACAGTGGGTGCTCACTGCGGCACACTGTGTGGGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018611:ENSRNOT00000025220:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(19.8=83.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTACCCTCCATCTCACGG
R:
GCCAGGGCCACTTACTTTCAG
Band lengths:
243-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]