MmuINT0164370 @ mm10
Intron Retention
Gene
ENSMUSG00000033825 | Tpsb2
Description
tryptase beta 2 [Source:MGI Symbol;Acc:MGI:96942]
Coordinates
chr17:25366550-25366925:+
Coord C1 exon
chr17:25366550-25366621
Coord A exon
chr17:25366622-25366759
Coord C2 exon
chr17:25366760-25366925
Length
138 bp
Sequences
Splice sites
5' ss Seq
CTCGTAAGT
5' ss Score
9.63
3' ss Seq
TGCTTCTTGTCTCTCTCCAGGCC
3' ss Score
12.05
Exon sequences
Seq C1 exon
AGATGCTGAAGCGGCTGCTGCTGCTGCTGTGGGCACTGTCCCTCCTGGCTAGTCTGGTGTACTCGGCCCCTC
Seq A exon
GTAAGTTGTCTTGAGCCCTCCCTGTCTCTCCCTCACCTTCACAGGCCACAGGAATGGGGAGTCTAGAGAATCCCAGGGTTAGCTCCAATTCAGGAGGGGCAAGGCAGGGCATGGAGGTTGCTTCTTGTCTCTCTCCAG
Seq C2 exon
GCCCAGCCAATCAGCGAGTGGGCATCGTGGGAGGACATGAGGCTTCTGAGAGTAAGTGGCCCTGGCAGGTGAGCCTGAGATTTAAATTAAACTACTGGATACATTTCTGCGGAGGTTCTCTCATCCATCCACAGTGGGTGCTCACTGCGGCACACTGTGTGGGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033825:ENSMUST00000069616:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(19.8=83.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGCTGAAGCGGCTGC
R:
GTCCCACACAGTGTGCCG
Band lengths:
237-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types