MmuINT0164370 @ mm9
Intron Retention
Gene
ENSMUSG00000033825 | Tpsb2
Description
tryptase beta 2 [Source:MGI Symbol;Acc:MGI:96942]
Coordinates
chr17:25503497-25503870:+
Coord C1 exon
chr17:25503497-25503566
Coord A exon
chr17:25503567-25503704
Coord C2 exon
chr17:25503705-25503870
Length
138 bp
Sequences
Splice sites
5' ss Seq
CTCGTAAGT
5' ss Score
9.63
3' ss Seq
TGCTTCTTGTCTCTCTCCAGGCC
3' ss Score
12.05
Exon sequences
Seq C1 exon
ATGCTGAAGCGGCTGCTGCTGCTGCTGTGGGCACTGTCCCTCCTGGCTAGTCTGGTGTACTCGGCCCCTC
Seq A exon
GTAAGTTGTCTTGAGCCCTCCCTGTCTCTCCCTCACCTTCACAGGCCACAGGAATGGGGAGTCTAGAGAATCCCAGGGTTAGCTCCAATTCAGGAGGGGCAAGGCAGGGCATGGAGGTTGCTTCTTGTCTCTCTCCAG
Seq C2 exon
GCCCAGCCAATCAGCGAGTGGGCATCGTGGGAGGACATGAGGCTTCTGAGAGTAAGTGGCCCTGGCAGGTGAGCCTGAGATTTAAATTAAACTACTGGATACATTTCTGCGGAGGTTCTCTCATCCATCCACAGTGGGTGCTCACTGCGGCACACTGTGTGGGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033825-Tpsb2:NM_010781:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(19.8=83.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGCTGCTGCTGTGG
R:
GTCCCACACAGTGTGCCG
Band lengths:
223-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: