HsaINT0171525 @ hg19
Intron Retention
Gene
ENSG00000197253 | TPSB2
Description
tryptase beta 2 (gene/pseudogene) [Source:HGNC Symbol;Acc:14120]
Coordinates
chr16:1279567-1279952:-
Coord C1 exon
chr16:1279892-1279952
Coord A exon
chr16:1279739-1279891
Coord C2 exon
chr16:1279567-1279738
Length
153 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TGACCTGGCACCTGCCCCAGCCC
3' ss Score
3.46
Exon sequences
Seq C1 exon
ATGCTGAATCTGCTGCTGCTGGCGCTGCCCGTCCTGGCGAGCCGCGCCTACGCGGCCCCTG
Seq A exon
GTGAGTCCCAGCCGGGGTCCACCCTGCCCCTCACCACATTCCACAGGTCAGGGCCTGGGTGGGTTCTGGGGAGGTCGGGCTGGCCCCCACACAGGGAAGGGCTGGGCCCAGGCCTGGGGCTGCTTCCTGGTCCTGACCTGGCACCTGCCCCAG
Seq C2 exon
CCCCAGGCCAGGCCCTGCAGCGAGTGGGCATCGTTGGGGGTCAGGAGGCCCCCAGGAGCAAGTGGCCCTGGCAGGTGAGCCTGAGAGTCCGCGACCGATACTGGATGCACTTCTGCGGGGGCTCCCTCATCCACCCCCAGTGGGTGCTGACCGCAGCGCACTGCGTGGGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197253-TPSB2:NM_024164:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(19.9=81.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTGAATCTGCTGCTGCTG
R:
CACTGGGGGTGGATGAGGG
Band lengths:
203-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)