RnoINT0156061 @ rn6
Intron Retention
Gene
ENSRNOG00000028812 | Trim80
Description
tripartite motif protein 80 [Source:RGD Symbol;Acc:1311352]
Coordinates
chr10:103999204-104004059:+
Coord C1 exon
chr10:103999204-103999266
Coord A exon
chr10:103999267-104003450
Coord C2 exon
chr10:104003451-104004059
Length
4184 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
NNNNNNNNNCCCAACCCCAGATT
3' ss Score
0
Exon sequences
Seq C1 exon
GCATCAGGATGAACTCCTATGAGGTGCTGCCAGCAACTGTGGACAGAAAGACACTACTCCAGA
Seq A exon
GTGAGTTCTCAATCCAGAGGCCAGCCTGGGGAAGGAGAGGAGGGAGAACTCCTAGGTGTCTAGACTTCCTGCCTCACCTGCATTCAGGTCCCCAGGGCACTTCCTGTTTCCTTTCCTGGTCTTTCACTGCAGACTGGGGCCCTCAGAGAGACTTAGCCTGGGTCCCAGGCCCTGTTAGGAAGAGGGAGAGCCCCCGTCCCTTCCTACTTCAGAGGTGGTTCTTCTGTGGCCCTCTGGACCCTGGGTGTCACAGCGTCTGCCCTTATCTGGATGGCTGCCAACTTCCCGAGGGTTAGCCAAATCAACCAGAGTAGGTTTTATTTATTCCTCAGACTCCAAGCTTCTGTTTATTTGATGTCCCTCTCCCTGGCCTTGGCTCCAGGTCCAAATCCCAAGGTTTCTGAGATATTGAGGGTCAGATATGGAACATTTTTGATCTCTGGTTCACCTCAGCCAGGAACCCCTCACTCTCCCCAAGTCTCATTCCAGTTGTCTTGAACAAATAAGAAAGGTGATTATGTTAGGATCTGGTGGGAAGGAGGAGGGACCCCTGCTCCAGCCCCTCCAGAAAGTCTAACATCGTACAGGGACTTACTTCAGGCTGTCCCATGCGGCCCTACCAGCGCTGGGCTATTTTAAGAAGTAGATAAGTCAGTCGTGTGCTAATCTAGCTGTTGGGAGGCTGAGATAGAATGGCTGCCATAAATCAAAGTCAGCCTGGGTATCCTGGGCTCAACAAAAGTAGTCAGTGACAACAAACCCAGTACACAGAGAGGGTGCCTCTTCTAAGAACTGGGGTAGAAGCATCCAGTGAAATCTTTGCAAACATCTTTGCAAAATAAATCTGCTCTTAGCCAGCGTCACTGCTCCTAGAGCAGTGACGGCTGGCTCCCTTAGCCTCCATCCCAACCCCAGATTACTGCAACCTGAACTTTGGACTCCTCCATGGCCAGCGAAGAGCTGTTCTTGTTCAAGGAAACGCACTCGGGGTTGAACTTGGGCATCCTCCTCTGGAGCCATCGACCACCAGCCCTTTACGGGCTTCAAGCCAGTGGCCCCAGGTTCTGTGGCTGCCCAGGCCTGTCGGAAGGCTGTCACTAAATGGGAACCGAGGTGGGTCCGACTCGTGGATGTGCCTGGGAGTCACCTACCGCGCAACCCTTCGATGGGACGGTCGCCACCGTCGCAACTCGTCTACCCCTGCTGGGCCCGCACCTATTCGTGGTGTCTGGAGTGGGACTCTCTCAAGTTCTCCTGTGCATAACAACACCGACAGACGGTGCTGCACGCTCCCTACCACCACCACGCTCCGGCGGTAGCGCTGGACTTCAGGGCCGGCTGCCTGTCCTTCTATGGCGTGGCGGCGCACGTGAGCCTGCTCTATCCGCTTCCTCACCTCCTTTCCTCGAACCTCTGTATCCCCCGCGGTCATGGTCAGCAGCGAGCCTCGCTCACACTCAAGCAGTACCCCGAGGCATAGGCAGCGGCCCGCCGGCCCAGGTGCTGCTAATAAAGTTAGACTCTAACGTACCGCTAGCAGGAGTTCGGAGAGGGTGGCTTCCTACGCGGTCCCCTGCGCCGAGATGAAGCGGTCGCCCTGCGCCGAGATGATGTCGGCCCACTGGCAGCCGAGGCATGAATGTGCGGTGGCCCAGCGCTGCTTCCCAGCCCTGTCTGGATTCATCAGGCACCTGTCTCGAATTCGCATGACGTGACCTTCTCCCATGAACTTGGAGGCCTGACACACTGGGGTCTCCTGGGCATGGGTACAGCCTGTGTCTTCCAGAGGCCAACATCTTCTTTAAATATTTCCACTCTTCCCCCACCCCATCCACAAACTTACTCTCAGACCCTCCCTGACGCTTGCCTATCGCTTCAGCAGCTCGTCAAGCCGCTTCCTCTCTCCAGGTTGCCTACCTATGACTAGCACAGGATACGAGACAGGGGTTGGCCGACTAGGGACCTTGCGGACGTGGAAATTGGGGCGGAGGACCCAGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAGATCTGATGCCCTCTTCTGGTGTCTCTGAGGACACCTACTGTGTACTTATATATAATAAATAAATAAATCTTAAAAAAAAAAAAAAAAGCTAGGCTGGGTGGTGTACACTTTAAATCTCAGCACTGAGGAAGCAGAGGCCAATGGGTCTATGGGTTCGAGGCCAGCCTAGTCTACAGAGCAAGTTCCAGGACAGCTAGAGCTATACAGAGAAACCGTCTGGAAAAACCAAACGCTAAAAATACAACAAAGAAAAAAATAAAGCCTGGGCCCAGAGAGATGGCTTCACTGGTAAGACACTGGCCAGTCAAACCTGACAACCTGAGACGTTTGCATTCCCACCTTCCCTGAGCCTGAAGAACCTTCGGGCTATGCCCATCAGCAGGTGGTGTGGGAGATATCCTTCTCAGTCCTCCGCATCTACAAAACAGCAGACATTGGGACAGCATATATATCTGCTGAGGAATCTAGACTCACGGGGCTTCCGAGGTCAGGAAGTGGAAACTCCCTTTGAGTAAGGCACACTAACCAGGAGACAAGAAGAGACATTGACTCAGTCACCAAGCTGCATAATACTTTATGGTAACACTCACCAACATTGATGCCAACCCCAGCACAGTCAGACTATCAAAATAGTAACTAAAGAGCAAACCCACTACAATGTTTCCATCCCTGTCTCCCTCTTACTCTAATCTCAGCCCTGAGGCCAAGAAAATTGTATTCCCAGAACTAGGTAAATTACACCATGGGTCATAGTTCATTGGATATAGTCTCTAGAGATATTTTGTTAAACTTTTACCTGAATACTTGAGCTCTTTGCCTTTAAAAAAAAAAAGAAAGGGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCAACCCCAG
Seq C2 exon
ATTACTGCAACCTGAACTTTGACTCCTCCATGGCCAGCGAAGAGCTGTTCTTGTTCAAGGAAACGCACTCGGTGTTGAACTTGGGCATCCTTCTGGAGCCCTCGACCACCAGCCCTTTACCGGGCTTCAAGCAGTGGCCCCAGGTTCTGTGCTGCCCAGGCCTGTCGGAAGGCTGTCACTACTGGGAGACCGAGGTGTCCGACTCGTGGATGTGCCTGGGAGTCACCTACCGTCGCAACCCTTCGATGAGCGGTCGCCACCGTCGCAACATCGTCTACCTGCTGGGCCGCAACCCCTATTCGTGGTGTCTGGAGTGGGACTCTCTCAAGTTCTCCGTGTGGCATAACAACACGCAGACGGTGCTGCACGGCTCCTACCACCACACGCTCGGCGTAGCGCTGGACTTCAGGGCCGGCTGCCTGTCCTTCTATGGCGTGGCGGGCGACGTGAGCCTGCTCTACCGCTTCCTCACCTCCTTCCTCGAACCTCTGTACCCCGCGGTCATGGTCAGCAGCGGAGCCTCGCTCACACTCAAGCAGTACCCCGAGGCATAGGCAGCGCCCGCCGGCCCAGGCTGGCTGCTAATAAAGTTAGACTCTACGTACCGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028812:ENSRNOT00000065292:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062223=SPRY=WD(100=68.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]