DreINT0070474 @ danRer10
Intron Retention
Gene
ENSDARG00000055647 | ftr82
Description
finTRIM family, member 82 [Source:ZFIN;Acc:ZDB-GENE-030219-207]
Coordinates
chr5:30106980-30109027:-
Coord C1 exon
chr5:30108959-30109027
Coord A exon
chr5:30107896-30108958
Coord C2 exon
chr5:30106980-30107895
Length
1063 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
TCTTTCATGCTCCTCTACAGACT
3' ss Score
8.25
Exon sequences
Seq C1 exon
CTAAAGAAATTCATACAGTGGACAGTTCGCCTCCTGTAGAACCTAAGACCAGATCTGAGTTTCTGAAAT
Seq A exon
GTAAGTACATACAGTGGAAAAATTATGATTTTACATTTTTAAAATTCTATATGTTTGTCTACATCAGGGGTGCCCAAAGTTTTTTCTTATAAAGGGCCAACAAACCAAACTTGATAGAGGGCTGTAGGCTGAATATATACTAAACCATATTTATTCAATTTGCCAAGGGCAATTTCATAATGTATTTGGTAATATTTAAAAATATTTTTCTTTAAATCATTAACTAATACAGTATCGTTTTAACGTTTTATAATGAACTTATTGCAGTAAAAACATAAACAATTCCATTTATAACACAAGGGATTTCAATGCTGAAAACACTAGTTGAGCTGCTTCTGCCTTTACCTTGATTTGCTCGCAGATGTCTTGTACATTGTCCTATATCTGTCAAGTGACAGTATTTATATTTTAAAAGTCTGATTCCTTTACAACATTTAATTAAATCGTTTAATTTCAGTAGGCTTTTTTGTAGCTCAGCAATAAAACAAAGAACAAAAGGTTGTTAAATTCAAAACGACAATCTCCATCAAAGTGAATTCGCCCCAACCACCTCCCCATCATTCACCCTCTCTATTCAGATGGGATGGTGGGACAAATCAAAGGTTACAATGGGCCAACTTTGGTCTATTCCCGACTTTGGGCATCTCACCATTATCTTAAATCTGTTAAAAAGGACATATTGTTATGCATGCTCATTATTGCTATTTTTACATTTAAATAATTTAACCAAGAACCAAGTTAACGATTAATAATCTAATATGTGTTACATATAGATATTTTTTTTCAAAAAGTATTCATTATGATGCCTGAACTGACAGTATTAAGAGTTTAGTTTTATAATTATTCAGATGAATTACAATAGAATATTGGCCATTTATTGCTTATTAGCCACATCATGAAAATAATCATTATCTTATCTGTATTGATTATAGTTTTGAATACTTTTTCAAGTCAAATAACTGTTTTCCTGACATTACTCACAATAACATCGTGTATTTTGAAGACATGCACAATATAATATAAAGGCCAACACATTAAATCAATCTTTCATGCTCCTCTACAG
Seq C2 exon
ACTACTGTCAGCTGAAATTAGACTCACACACGGCACATAAGGAGCTGTACTTATCTGAAGGAGGCAAGAAGGTAATTCGCACCCGGGACCTGCAGCCGTACTCTGACAACCAAGATCGCTTCGATAGCTTTGCTCAAGTTCTGTGTCGTGAGGGTCTGTCTGGTGGCCGCTACTACTGGGAAGTGGAGTGGAGTGGGGAATTCTCCATCGGAGTGGCCTATCGGGGCATTAGCCGTAAAGGTAAAGGCTCCTTGTGTTTGCTGGGCTACAACGATAAGTCCTGGAGCCTCCTCTGCTCTGACACTGGGTACTCGGCCTGGCATAACAGGGCAGACAAGGCTGTTAGTGGCCCTCACTCTTCCAGAATAGGTGTCTTCCTGGACCACTCCGCAGGGGTTTTGTCCTTCTACAGTATCGGTGATACTATGACACGTCTGTATCGCTTCGAGACCACATTCACCGAGCCCCTCTATCCTGGGTTTGGTGTTGGAACGTCAGTCAAGATCTGCCAATTGAAATGAACACTGCATGAGATGTGTGCTTTTTTATTATTAAGAAACTAAAGTGATGAACTGACATTTTTGATCTTTGTTGAATGATTTTGTATTTGTTTTTTTTACTCTGGCTTTAATGTTGAATGTCATTCGTAAGCTGTCGTTTAAATAATTTTAACAGGTTCAGGAAGGATTAAATAACTTTTCAGCAATGACGCTATACACAAACTGTGTACTTTTCTCTTAAATGAAGGCATGATTGATGGACATTCTTTCCCAAGTTGATCAAATCTTTTTCAGTTGACTATTGTAATAAAATCTCACCATGTGTGTATCCAAATGCAAGACCTATTGTTATTGTAAAGCAACATTATTCAGCAATGACTTCATATTTCAATAAAGTTGTTATACATATTGTTCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055647:ENSDART00000016758:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.458 A=NA C2=0.012
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF137651=PRY=WD(100=28.2),PF0062223=SPRY=WD(100=68.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAGTTCGCCTCCTGTAGA
R:
AGGAGGCTCCAGGACTTATCG
Band lengths:
342-1405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]