RnoINT0156982 @ rn6
Intron Retention
Gene
ENSRNOG00000011470 | Tsc1
Description
TSC complex subunit 1 [Source:RGD Symbol;Acc:620124]
Coordinates
chr3:7242633-7250010:+
Coord C1 exon
chr3:7242633-7242706
Coord A exon
chr3:7242707-7249834
Coord C2 exon
chr3:7249835-7250010
Length
7128 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
ACTTATGTTCCCTTTTCTAGGTG
3' ss Score
13.11
Exon sequences
Seq C1 exon
CCAATGATGGAGCATGTGCGAATTCACCCGGAATTAGTGACTGGATCCAAGGACCATGAACTGGACCCTCGAAG
Seq A exon
GTACAGAAACTAAATTAGTGACAGAATTTTTGAGTCTCTTAAGAGATGAAAATGTGATCTATGGATACCGGTGGGAATATAGATATTCCACTTGTGTAATGGGCTAGAACTTTGCATCTAAAGCATTCTCTTCACAGAGAGCTACTGACTCTGTGAGCACAGCAGAGGTGGTGACAGCTACTGCCTGTCTCATGAAGCCCAGGAAGGCTTGCTTTTTGGTATTTGGGTCGGTAAGTTAATTGGGAAGCCAAAAACTAGGAGATTGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGCCCTTTTTTCCTCCGAAAAAAGGAAAAGAAGAACAACAACAACAACAACAAAGAAACTAGGAGATTACTGAGACCAGATTTGGAGTTAGGAGCCTCTTTGGGTCCCTTTCTCCATAAACGTTGCCAGGTGTCTGATTCCTCCTTTCCCAATCACCATGGGCCCTGCGGGAATCTCCACGCGCTTCCTGAGGAGCTGTGGGCCTGCTGAGTTGCAAGAGGCACAGCTCCTCTGCCTGTCAGGCAGGCTTACGATCCCCAGGGAGGGGTGGAAGCTTTGGGGGAAAACTGAGCTGGGGTATCTCTGAAAGACTGGCTCGTGCCTGGTAATCCTTCTAGAGTTGTGCCTCTACAGTCTACTGCTGTGGTGCAGCCTAAGTCAGCTTAAAGCAAACTGTAAGAGCATGCAAACATGTTAGCTCTGTCTTAGAAGCTCTTCCTCCCTGCTCCCGATCTTCCTCAGAGGCAGCTGCTGCCTTCCTTTCTGTTCACTCTTCTTTCTGTAGTCTGCCTTGTGTGGCTTGTTTTGAGAGCTGACTGCTCTTAGAGGCCACCTTGCAGAGGATGAGGATAGACTGGAGCATTGTCAGCCTTCGTGGGCCTGGCTTCACCTTCTTTAAGCTGCCTTCAGGGGAGTCATTGCGAGAGGTCACAAGTGAGGCCTGGGAAGCATAGACTATCCCTGTGTGTGTCTCCCAAAGCTGCTCGTGAGGGCTGTGCTTCAGATATGCTGTTTTGGATGCTCTGGTATCAGGGGAGGTCTGTGCAGAATCCTTTTGTGGAGTAAAGGCTGTGCTGATGGAGGGAGTGAGCTTCCTCAGTGTGTAGTGAGACAGGTTTTCTCAGATCACTGGATGCTGCACCTCGGCTAAGAGGAGGTGTGCTGTAACATGCTTGTCTCTTGGCTGGTCTGTTCTAGGATAAGCCTGTGGTGACCTAACTTTGGGCTTGTTCTCCTGAGCTATTGCTTGGCCTGTTTCCTGGGCACCATCTACTATTTCCTATATTTTGTATCTTTTTTTTACTTGTGTGAGTTGGCAGTTACACACACATGTGTGCACGTGAAGACCAGAGGTGGGTGTTTTCTTTAATCAATTCTCCATCTTATTTTTGAAGCATAATCTTTTACTGAATCTGGAATTCATCATAGCAAAGCACCCCACTATGTTTGTTTTGTTTTGTTTGGTGATAGGTATGGGTTCCAGGGATTGTACAAACACTTTTCCTTTTCTGACTGGGCCATCTCCCAGCCCCTCACTTAGGTTGTGCTGTACTGTATCTTCTAGCCAGATGCTGTTGACTTGGTTGGGTGTGAATGCTGAGTTGAGAGTTAGTCTTCTTCAGAAATTGGAGGCAGAACCCACTGCCATTTTGCTGACAGTGTTGATGGTACGTTTTCCTCCATGGGGTCTGACAGAATATATCTCTGTTGGCATGATATTCTGAAGTTTCCCTGTGACACACCTTGGCATGAATCTGTTGTCATTGTTCAGCATACAAGCTTTAAGTCTTAGGAGGTTTTCTTTAATGTTGCAGGAGTGGCTTTCCTACTCTGGTTGTCTGTCCTTTCTACATCCCCAGTGGTGATATCAGAACCTATTTTTAGTCTACTCCACAGGCTTTCTTGTCATTGAAATGCAGCTTCCCCTTTAGTTATTCCCACCTTTGTGCCTCTCACCTGAGTGCTCTCTTTAGCTTGCTGAGTGCTTGTCTTTAGTCTCCTTTCTTTGTCTCTTGGATACAGTGTCTTTTATTTTCCCTTCATGGTCTATTTCTTCTAAGCACCCTCCCTTCATTTACTTGTTTTGATTTGTCCTTTTTAAGTCTTTGAGGCTTTTCATAAAAGCTTTGGGTGGGAAGACAGGAACTGTACTTGTGAGGTTGGGCGTGTTGATCTAGAGCCTTTCTGTGAACCTGCATCCAGGGTTGGATACCAGCACTGGGGCCGTGTTGTGAGGTTTTGGACTCCTAAGGGTTGCTCTCAGTGTGTGGCAGCTAACTGGTGGCCTGAAGCATTTCTTTTTCCCTTAAGCTCTGGCTTAGGACTTTGCTTCTGAGGTTGGACATAAGTCTGTCTGCTGCTCTCCGGACTTAGACACTGTGCTCTCTGTCTTCTCTTTCTCCCTGTGCTTTGTATTTGAAAATAGGTCTTTACTATAGATGGCGGAACATCAGGAGATTGTACAGTGGGGTAGAAATATTCAGTCCGCCATATTAACCTGAGACCTTCTCTCTCAGAAGTAACACACAGCAGCTCAGTGCCTGGTGGTGTGGACCATTTGGTCTTGGAAGGAGGCTCTGTCTACTGTGATGAGGAAAGGGAGCCAGGAAGAAAATCTTGACAGCAAAGCCATAGAGCAGCCAATTGTGCATGGTTATATGGAGGCAGGGTGACACAGTAAAGGCATTCTGACATAGTAGAATTCTCTTGAAATTAAAATGAACTCCCAAATAAGTATTTCAGCTAAGGAACTGGAATAGAGCTGAGACTGGCTCAGTTGAATAAAGGACAGAGGCAGGAGACAGATTTAAAATGTTGGGTGGCGCCCAATAGACAATAAAAACACCTGTAAAAGGAGAAGAGGACACTTTGATAGGAGAGCTTGTAAAAGAAATTTCCTGAAGTTGAAGTTTCTAGATTGAAGGTGTTGGTCAAGTGCACAGCTCCATCAGTGCAAAGGAATGCTGCCCAGCCTCAACTCTGTGAGATTGAAGAACACTAGAGGAATAGACCTTTCAGAGAGTGGGAAGATGAAAATACCCAGACAATAAGAACCAGAAGCCAGGATAGTGTTAGCTTCTCAACTCCTTCAAGAAGGTTCCAGGTCGGGGCTGAAGAAATGGCTCAGCGGTTAAGAGCTCTGACTGCTCTTCCAGAGTCCTGAGTTCAAATCCCGGCAACCACATGGTGGCTCACAACCATCTGTAATGAGATCTGGTGTGTCTAAAGTCAGCTACAGTATACTCGTATACATTAAATAAATAAATCTTAAAAAAAAAAAAAAAGAAGGTTCCAGGTTAGAGTTCTGTGGTGTGGGACTCTTCTGGACAGGACAAGACTCAGAGTTTTCAGAGTTACCCCATTGCCTCCCCAGCTGGCTATGGGAGAGTGTTTTCCCAAGTAAGCCCAAGAGGGGTGAAGGTAGGCTGGTCACAGAGGTGTCAGAACACTGAGCCAGAGGCTGACACAGCTCCAGAAGGGAGCTCAGTGGGGAGAGGGGACTAATCTGGTAGATTTTGCATTTCATTATATGAGAGAAACAGTGGGCATTAGTCCAGAGTGGCCTGGGTAGTTCACTTAGCATTGGACACCTCACAAACTGGGAGAAGGAAACAATGCCAGGTCATACCGCATGAGAAACTGTATCAGAACCCTCCAGGACTGGTGCTTACATAGCCTTAATACTTGTTCAACTCAAGGAGAGGGAAGGGTGCATGGCAGTGACGCTGGTCCTCAGAGCAGGGCAGCAAGTGAGAAGCACAGTGCACTTGTTGAGCCTTAAGGGGGAAGCAGTTCAGAAGCAGACGTGGAGGCAGTAGCCAGAGCAGTCACAGAGAACAGGGCAAGGCACCTGGACGTGGCACTGACTTGTTTCTGGTTTTTGGGACAAGGTCCAGGTGGGCCTTGACCGCGCAGTCTCCTGTCTCCATCCCCCCGGCCCTGTGATCATAGTCTGTGGGGACTATAAACTGACCCTGAGATGCCATCAAATGCACAACACACATTTTATGTGGATCTGAGAGGAGGGATACCAGCTAAACAGATGTGTAGCTGTTAAGATTGTAGTTTGCAATTTTAGAGATATTAAAATATAAACAGTCTATTTAAGCCAGGGATGGTGGCACATGCCTTAACTCCCAGTATCCAGGTGGCAGAGGCAAGATCTCTGATTTTAGGCCAGCCTGGTCTACAGAATGAGTTCCAGGACAATGTGGGCTGCACAGAGAAACCTTGTCACACAAAGACTAAATACAAAATTTTTTAATAAATATATTTAAGTATCAAGGAAATACAGTGCATGATTTTGCTCAATCTTTAAATAAAACATTTAGAACCAGTGGGTGGCTTAGTGGCCGAAAGCATGAGCCTGAGGACCTGAAGCCATGGTGGAAGGAGAGCCACCCCCATAAGTTGTCCTCTGACCCCTTTAGGGATGCTCTATTGCACACAAAAGAATTGTAAAAATAGGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAACCAAAATAAATAAATAAATAAATAAAAAGAATTGTAAAAATATGTAACTGGATGCTTCTCTAGCATGCATAATACTCAGAGTTCAGTCCCCAGCACTGCAAACATAAGTAAAACATCTAGTGTAATCCTCTTTTATGTTTATTTACTGTCTCTGTCTGTGTGCATGCATGCATGCATGAGCCATGTGTGTGGAGGTCAGAGGACAGCTTATTGGGATCATTTTCTGTTTCTGTCATGTGGGTGGGTTCCCGGGTTTAACCTGGCCAGTCAGGATTGGCTGCAGATGTCTACCTGCTAAGTCCTCTTGGCAGCCATGTAGTGGTTTTTTTTGGTTTTTTTGTTTGTTTGTTTGTTGTTTAATTAAGGAATCTTACTTCCTTTACTAAAATTAATCTTGTGCATATATGTGTCCTGACTTGCTCCTTACTTAATCACTGTTTAGTGACACTGAGGGTGTGGAAAGTGGAGCCCTCCCCACTGCACTGCCATAACCCAAGGGACTTGGGCTAGGGCTTGAAACACTTGCCATTTAGGGAAGCAGCCCTGTGCTCTGGTGGCACCCCATCCACCCTCCCTAGGGTCCCTGAGAGTGACTATGAACTCAGACCACAGACATTAGAGCTCTGTGCTCTACAAGCAATTTTGTACTAGGGCAGTGTGCATAGTCTTAAGTGTTCTTCTGGTTTAGGGGCATCTGTAGAACATTTGGCAGACCCAGAAGAGATACAAGAAGGAAGCAAGAGAATAGATGTTGCCTGTAACTCCAGGTTTCTGTAGATGTTGGGCAAGCATCTATGACAAAGCTATAGTCCAAGCTTGTGTTTGCGGGGGTGGGAGGGCATGTGTATGTGGTGGTCAGAGGGCAACTTTTCAGGGATCAGTTAGTTCTCTCACTGTGTTTTGAGGCAGGGTCTTTGCATGTTTTTGTCACTGTAGTACACTGACCTAGAGCTTCTGGCTGAGACTCCTGTCTCTGTCTCCCATATTGCTGTAGGGATTAGAGTTGAATACTACCACATCTGGCTTTTTCTGTGGGTACCAGGGGTCAACTCTGGCCTACCAGGCTTCCTTGTGGGGTGGACACTTTTACCTTCTGAATCCTGCTAGTTCTTTGAATGTCTATACTGTCACTCTATCTGTGGGCACACAGCAGGGCAGTTTTGTATTGTTTTTTCTCATTTTAGATAGTGTAGAGTAATGAAACAGCTCATTGGTTTTTAAGGCACCTGCTGCTAAGTCCTATTCAATCCCTAGGACTTACGTGATGGAAGGAGAGAACTAATTCCCATGAGTTGGCCTCTAATCTCTATGTCTCACTGTAGCATTACCCCCAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGAAAGGAAGAAAGGAAGGAAGAAGAAAGGAAGAAAGAAAGAAAGAAAGAGAAAAAGAAATCTTTTTAATCTCTATGTCTTGCTGTAGCATTGCCAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAAAAAGAAATCCTTTAAAAAGAGATTATATTCTAGGCAGGTGCATCTTAGCAAGCACTTGGGATTGTCACAAATTCAGGGACAGCCTGGGATACAGAATGAGTTTCAGGGGAGCCAGGACCATAGAGTGAGACCTTGTCTCAAAAAACTTAAGACAGAAAACTCAAACAGAAAGATGGTGAGAGTCCTTCAGTATTGGAAGGCATAATTTTTAAAATTGCCTTCAATGAGGTGTATGGTTTACACACAATAGTTTTGTTAAGTTTTGACAACAGCTGTGACCACAGTAAAGAAGATTTCCCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAAGAACCAAAAAAAAAAAAGATTTCCAAGGCCCACAGCAGCAACTGGTCTGTTGAAAGTCTGTTGCTCACAATGTTGTACTGACCGTCCAGCTGGAGGACAGCTCCCTATGACTGCCCTTATTTCTGTGAAAGCCATGCTGTGGTGCAGCACTGTCTCTTGTGGTTCTGTAGGATTAATTGGAGGTGGGCCTGAGGCTCACATGGAGGAACCCTTTAACAGTGCTTTACATGACCTTTAGTCTTAGTTGGTCACACAGTATTCCTAATCCAGGGATGTGCGAGAAGAACCCCTAGGCTTTGGTTGGAGACCTTAGGTCAGCCAGCTCCTTGGTGCCTTCCAGCTCCTCCATTTCCTGATTCTTTTGTTTCAAAGCAGAGTTCCCTGAGAGCCATCTGTGTAGTTTAAGAGGCTGTTCTTTGTCTCTGTTGGTGATGGTTTTTTTCTCCAATTAGTTCTGTTAACATGAGGAAACCATGCTAACTTGAGGAAGTGGCTTGTTAACTGATGGCAAGTTTTTGTCCTAGTGCTGTCTCCTGCCTGGGTTGGCATGGCTGTGCCTCATTCTTTGGTAGTCACAGTCCAGTGGCTGCCACTGAGCTGGCCTCTTGATTTAACTGGTGTGCTTAGATGGATTATGCATGCTTTTTTTGACTTATGTTCCCTTTTCTAG
Seq C2 exon
GTGGAAGACATTAGAAACTCATGATGTTGTAATAGAGTGTGCCAAAATCTCTCTGGACCCTACCGAAGCCTCATATGAAGATGGCGATGCTGTGTCTCACCAGCTCTCTGCCTGCTTCCCTCACCGTTCAGCTGATGTCACCACCAGCTCTTACGTGGACACACAGAATAGCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011470:ENSRNOT00000016904:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=NA C2=0.217
Domain overlap (PFAM):
C1:
PF043887=Hamartin=FE(3.3=100)
A:
NA
C2:
PF043887=Hamartin=FE(8.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]