RnoINT0161417 @ rn6
Intron Retention
Gene
ENSRNOG00000007710 | Usp20
Description
ubiquitin specific peptidase 20 [Source:RGD Symbol;Acc:1305621]
Coordinates
chr3:9844121-9844656:+
Coord C1 exon
chr3:9844121-9844261
Coord A exon
chr3:9844262-9844540
Coord C2 exon
chr3:9844541-9844656
Length
279 bp
Sequences
Splice sites
5' ss Seq
AAGGTTCGG
5' ss Score
5.96
3' ss Seq
GTCCTGTGCTGTGTTCCCAGCCC
3' ss Score
7.24
Exon sequences
Seq C1 exon
AGCCAGACAATGAAGTCCACATTCGCAGCTCCTCTCGCCCCTGCAGCCCTGTCCACCACCACGAGGGCCATACCAAGCTGTCCAGCAGCCCTCCTCGTGCAAGCCCCGTGAGGATGGGGCCATCGTACGTGCTCAAGAAAG
Seq A exon
GTTCGGGGGCAGTCATGAACTCTGCTGGGGATAACATAGTGACCAGTTTGGGGCACTTCAACCTTGGTCCAGGCTGTGTGCTGCTCACTTGAGCCCTTAAACCCTTGTAATAGCCTTGGGGTGTGAGAGGGAACCCCATTTTATAAACAGTAGTGCTAAAGTGCCAAGGGGCGAAGTGTGTAAACAGTGAGGGCTCCACACTGTGGCTGAGGAAGCCACTGTCTGTGCCTGCGCCTGCCAGGCAGGGGAAGCTGGCCTAGTCCTGTGCTGTGTTCCCAG
Seq C2 exon
CCCAGGTGCCGAGTACTGGTGGCCGGAGGCGGAAGGAACAGAGCTACCGCAGTGTCATCTCAGATGTCTTCAATGGCTCTGTCCTCAGCCTGGTGCAGTGTCTTACCTGTGATCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007710:ENSRNOT00000010786:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.333
Domain overlap (PFAM):
C1:
PF0044324=UCH=FE(8.7=100)
A:
NA
C2:
PF0044324=UCH=FE(7.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAGACAATGAAGTCCACA
R:
CACAGGTAAGACACTGCACCA
Band lengths:
252-531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]